miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 52025 0.72 0.574247
Target:  5'- gCCGCCGAGGaG-GUGcUACGCgaGGCGg -3'
miRNA:   3'- -GGUGGCUCC-CgCAC-AUGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 52279 0.7 0.726018
Target:  5'- cCCGCgCGccGGCuuuGUGUGCGCgaccgcgGGCGCg -3'
miRNA:   3'- -GGUG-GCucCCG---CACAUGUGaa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 53258 0.7 0.73582
Target:  5'- gCCGCCucggcGGGGCGcUGcGCGCccaGGCGCg -3'
miRNA:   3'- -GGUGGc----UCCCGC-ACaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 53411 0.71 0.675987
Target:  5'- gCACCauggggcugGAGGGCGcGUGcCGCUUccaccGGCGCg -3'
miRNA:   3'- gGUGG---------CUCCCGCaCAU-GUGAA-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 53692 0.66 0.888472
Target:  5'- gUCACCGcgaaccAGGGCGagucUGUGgGCcggcggcUGGCGCu -3'
miRNA:   3'- -GGUGGC------UCCCGC----ACAUgUGa------ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 53713 0.7 0.716137
Target:  5'- gCCGCCGgcggcucgcGGGGCGgaucgGCGCgcGGCGUa -3'
miRNA:   3'- -GGUGGC---------UCCCGCaca--UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 53805 0.67 0.881572
Target:  5'- gCCGCaCGugcaaGGCGUGU-CGCg-GGCGCg -3'
miRNA:   3'- -GGUG-GCuc---CCGCACAuGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 54536 0.67 0.859569
Target:  5'- gCCGuCCGGGGGCGcagACGgCgggggcGGCGCg -3'
miRNA:   3'- -GGU-GGCUCCCGCacaUGU-Gaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 54580 0.68 0.818906
Target:  5'- gCC-CCGcGGGC-UGggcgGCGCUggcGGCGCg -3'
miRNA:   3'- -GGuGGCuCCCGcACa---UGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 57660 0.68 0.801406
Target:  5'- gCGCCGucGGGCaggcgGUGgGCACggUGGUGCu -3'
miRNA:   3'- gGUGGCu-CCCG-----CACaUGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 59492 0.68 0.826564
Target:  5'- cCCAgCCGgcAGGGgGUGcGCcgaggccgcaccgGCUUGGUGCg -3'
miRNA:   3'- -GGU-GGC--UCCCgCACaUG-------------UGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 59560 0.67 0.859569
Target:  5'- gCGgCGGGGGCG-GUGCcggcggaaGCUcuggcUGGCGUg -3'
miRNA:   3'- gGUgGCUCCCGCaCAUG--------UGA-----ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 59606 0.68 0.801406
Target:  5'- gCCGCCGAGaucGCGcgGUGCGCcguGCGCu -3'
miRNA:   3'- -GGUGGCUCc--CGCa-CAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 59867 0.68 0.818906
Target:  5'- gUCGCCGAGGGCcg--GCGCgcggccuccgcgUUGGCGa -3'
miRNA:   3'- -GGUGGCUCCCGcacaUGUG------------AACCGCg -5'
6363 3' -55.9 NC_001847.1 + 60349 0.72 0.578285
Target:  5'- aCUACCGAGGGCccGUcgaacGUGCACaccuucgccagggGGCGCg -3'
miRNA:   3'- -GGUGGCUCCCG--CA-----CAUGUGaa-----------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 60460 0.66 0.919534
Target:  5'- gCCcCCGucGGGCGcGUcCGCcaUGGCGCc -3'
miRNA:   3'- -GGuGGCu-CCCGCaCAuGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 60859 0.67 0.867116
Target:  5'- gCGCC-AGGGCGUccaGCGCggGGCGg -3'
miRNA:   3'- gGUGGcUCCCGCAca-UGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 60862 0.66 0.907808
Target:  5'- cCCGCCGAGGccaGCGca-GCGCgc-GCGCg -3'
miRNA:   3'- -GGUGGCUCC---CGCacaUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 61296 0.67 0.867116
Target:  5'- gCACCGcGGcGGCGUuuuuaugcgcggGUGCGCggGGCGg -3'
miRNA:   3'- gGUGGC-UC-CCGCA------------CAUGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 61552 0.69 0.755143
Target:  5'- gCCGCCGGcaacGGCacgGUGCGCgaGGUGCa -3'
miRNA:   3'- -GGUGGCUc---CCGca-CAUGUGaaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.