miRNA display CGI


Results 121 - 140 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 62135 0.66 0.901593
Target:  5'- gUCugUGAGcGGCGUGcGCA--UGGcCGCg -3'
miRNA:   3'- -GGugGCUC-CCGCACaUGUgaACC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 62486 0.66 0.888472
Target:  5'- gUCGCCGGcGGGCGgc--CGCggggUGGCGg -3'
miRNA:   3'- -GGUGGCU-CCCGCacauGUGa---ACCGCg -5'
6363 3' -55.9 NC_001847.1 + 63296 0.66 0.910229
Target:  5'- uCCACCgcugggGAGGGCGUGcu--CUuuuucccggagccgaUGGCGUa -3'
miRNA:   3'- -GGUGG------CUCCCGCACauguGA---------------ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 64178 0.66 0.907808
Target:  5'- gCGCgGAcgGGGCGgcgGgcgcgACGCUggcgacccUGGCGCg -3'
miRNA:   3'- gGUGgCU--CCCGCa--Ca----UGUGA--------ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 64678 0.68 0.818906
Target:  5'- uCCACCGGGcgcccgcGCGUGUcGCAgUgcgucaGGCGCg -3'
miRNA:   3'- -GGUGGCUCc------CGCACA-UGUgAa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 65731 0.72 0.584354
Target:  5'- cCCGCCGGGGcggcgcucgagaGCGUGgugGCcCgcgGGCGCa -3'
miRNA:   3'- -GGUGGCUCC------------CGCACa--UGuGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 66330 0.67 0.851819
Target:  5'- cCCugCGGcGGGUGgg-GCGCg-GGCGCc -3'
miRNA:   3'- -GGugGCU-CCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 66638 0.75 0.448609
Target:  5'- aCGgCGGGGGCGcguuUGUGgACUgccUGGCGCg -3'
miRNA:   3'- gGUgGCUCCCGC----ACAUgUGA---ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 66788 0.72 0.614853
Target:  5'- uUCGCCGGcguacgucuGGGCGUcgGUAgGCggGGCGCu -3'
miRNA:   3'- -GGUGGCU---------CCCGCA--CAUgUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 67834 0.71 0.635263
Target:  5'- aCGCCGgcGGGGC-UGccgGCGC-UGGCGCg -3'
miRNA:   3'- gGUGGC--UCCCGcACa--UGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 67943 0.69 0.755143
Target:  5'- cCCGCCGcucGGcacGGCGUGUGCuACcUGcGCGCc -3'
miRNA:   3'- -GGUGGC---UC---CCGCACAUG-UGaAC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 68074 0.66 0.913789
Target:  5'- gCCugCGgcGGGGCGa--ACGCcgcGGCGCg -3'
miRNA:   3'- -GGugGC--UCCCGCacaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 68827 0.71 0.651586
Target:  5'- cCCGCCGcAGGGCGccgcgaagaGCUcgGGCGCg -3'
miRNA:   3'- -GGUGGC-UCCCGCacaug----UGAa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 69333 0.67 0.881572
Target:  5'- -gGCCucGGGCGcugcUGgcgGCGCUggugcUGGCGCg -3'
miRNA:   3'- ggUGGcuCCCGC----ACa--UGUGA-----ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 70224 0.67 0.857266
Target:  5'- cCCGCCGGcguuGGUGUG-ACGCgcggggcgggcggcgGGCGCg -3'
miRNA:   3'- -GGUGGCUc---CCGCACaUGUGaa-------------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 70527 0.66 0.895147
Target:  5'- gCUGCUGGGcGGCGUGcugGCGC-UGGC-Cg -3'
miRNA:   3'- -GGUGGCUC-CCGCACa--UGUGaACCGcG- -5'
6363 3' -55.9 NC_001847.1 + 70694 0.71 0.645468
Target:  5'- gCCGCCGcGGGCGgcgGCGgg-GGCGCc -3'
miRNA:   3'- -GGUGGCuCCCGCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 72737 0.68 0.813724
Target:  5'- gCGCUGAuGGGCGg--AUACUucaagcugaguccgcUGGCGCu -3'
miRNA:   3'- gGUGGCU-CCCGCacaUGUGA---------------ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 73177 0.66 0.907808
Target:  5'- cCCGCCGcgccGGCGg--GCAC--GGCGCg -3'
miRNA:   3'- -GGUGGCuc--CCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 73215 0.72 0.588407
Target:  5'- gCCGCCGcugacgcggaggaggGGGGCGgcgGCGCg-GGCGCg -3'
miRNA:   3'- -GGUGGC---------------UCCCGCacaUGUGaaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.