miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 102689 0.71 0.675987
Target:  5'- gCGCUGGcGGGCGUGUGCuGCggcaGCGCc -3'
miRNA:   3'- gGUGGCU-CCCGCACAUG-UGaac-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 102603 0.67 0.881572
Target:  5'- gCGCCGAGGGC---UGCGC---GCGCa -3'
miRNA:   3'- gGUGGCUCCCGcacAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 102125 0.67 0.851819
Target:  5'- gCGgaGAGGGCGgcgGCACUccGCGCg -3'
miRNA:   3'- gGUggCUCCCGCacaUGUGAacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 101786 0.66 0.907808
Target:  5'- aCUGCUGAGGGUGagGUGCGa--GGgGCc -3'
miRNA:   3'- -GGUGGCUCCCGCa-CAUGUgaaCCgCG- -5'
6363 3' -55.9 NC_001847.1 + 101526 0.69 0.745531
Target:  5'- gCCGCCGcgcccgucgccAGGGCGUcca-GC-UGGCGCa -3'
miRNA:   3'- -GGUGGC-----------UCCCGCAcaugUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 101464 0.66 0.895147
Target:  5'- gCCGCCGcgcggccgcaAGGGCG-GcGCGCUagcgaccgaGGCGCc -3'
miRNA:   3'- -GGUGGC----------UCCCGCaCaUGUGAa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 100868 0.75 0.457768
Target:  5'- cCCGCCGGGGGuCGgcgGCAgg-GGCGCg -3'
miRNA:   3'- -GGUGGCUCCC-GCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 99772 0.69 0.755143
Target:  5'- gCCGCCGcggcuuuGGGCGgggGgcaGCGCcugUGGUGCg -3'
miRNA:   3'- -GGUGGCu------CCCGCa--Ca--UGUGa--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 99625 0.67 0.867116
Target:  5'- cUCGCCGAGGa----UGCGCUcGGCGCg -3'
miRNA:   3'- -GGUGGCUCCcgcacAUGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 99497 0.66 0.895147
Target:  5'- gCCGCCGAGgcGGCGcgGUccaGCGCUggccccaGCGCc -3'
miRNA:   3'- -GGUGGCUC--CCGCa-CA---UGUGAac-----CGCG- -5'
6363 3' -55.9 NC_001847.1 + 99322 0.67 0.856493
Target:  5'- cCCGCCGGGGGCcgaagcuaaaggGUGgGCggccgGGCGg -3'
miRNA:   3'- -GGUGGCUCCCGca----------CAUgUGaa---CCGCg -5'
6363 3' -55.9 NC_001847.1 + 98861 0.67 0.88087
Target:  5'- aCCAgcagaucCCGgaAGGGCGcGUGCGCcugGGCGg -3'
miRNA:   3'- -GGU-------GGC--UCCCGCaCAUGUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 98589 0.69 0.745531
Target:  5'- uCCAUUG-GGGCGccgGCGCUUgggcGGCGCg -3'
miRNA:   3'- -GGUGGCuCCCGCacaUGUGAA----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 97624 0.66 0.907808
Target:  5'- aCCGUCGAGGGUGcGUcCAggcGGCGCg -3'
miRNA:   3'- -GGUGGCUCCCGCaCAuGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95758 0.75 0.448609
Target:  5'- gCGCgGGGGGCGgcgcgGgcCGCUcUGGCGCg -3'
miRNA:   3'- gGUGgCUCCCGCa----CauGUGA-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95704 0.75 0.448609
Target:  5'- gCGCgGGGGGCGgcgcgGgcCGCUcUGGCGCg -3'
miRNA:   3'- gGUGgCUCCCGCa----CauGUGA-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95650 0.75 0.448609
Target:  5'- gCGCgGGGGGCGgcgcgGgcCGCUcUGGCGCg -3'
miRNA:   3'- gGUGgCUCCCGCa----CauGUGA-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95323 0.66 0.901593
Target:  5'- gCGCCGgcAGGGCcgaagGCGCagggGGCGCa -3'
miRNA:   3'- gGUGGC--UCCCGcaca-UGUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95226 0.67 0.874452
Target:  5'- gCgAUCGGGGGCGcgaucgGggGCGCgaucgggGGCGCg -3'
miRNA:   3'- -GgUGGCUCCCGCa-----Ca-UGUGaa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95178 0.67 0.874452
Target:  5'- gCgAUCGGGGGCGcgaucgGggGCGCgaucgggGGCGCg -3'
miRNA:   3'- -GgUGGCUCCCGCa-----Ca-UGUGaa-----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.