miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 93765 0.68 0.810236
Target:  5'- gCgGCUGAGcGaGCGUgacGUGCGCUcucGGCGCg -3'
miRNA:   3'- -GgUGGCUC-C-CGCA---CAUGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 92796 0.69 0.764648
Target:  5'- gCCACCGAGGaCGUGgcCgGCUgGaGCGCc -3'
miRNA:   3'- -GGUGGCUCCcGCACauG-UGAaC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 90329 0.71 0.635263
Target:  5'- -uGCCGAcugGGGCGcgGUgccGCGCUcGGCGCu -3'
miRNA:   3'- ggUGGCU---CCCGCa-CA---UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 89571 0.69 0.764648
Target:  5'- cCCGgCGAGGGCGUGgaGCGCgacGcCGCc -3'
miRNA:   3'- -GGUgGCUCCCGCACa-UGUGaacC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 89087 0.66 0.907808
Target:  5'- cCCACCGGGaguaccGCGUGcGCACagaaGGCaGCg -3'
miRNA:   3'- -GGUGGCUCc-----CGCACaUGUGaa--CCG-CG- -5'
6363 3' -55.9 NC_001847.1 + 88900 0.77 0.324721
Target:  5'- cCCGCCGGGGGCGgcu-CcCUUGcGCGCg -3'
miRNA:   3'- -GGUGGCUCCCGCacauGuGAAC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 88808 0.75 0.457768
Target:  5'- gCCGCCGAcgcggcccgcGGGCGgccgUGcUGCGCUcGGCGCu -3'
miRNA:   3'- -GGUGGCU----------CCCGC----AC-AUGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 88558 0.69 0.783297
Target:  5'- gCGCCGgcGGGGC-UG-ACGCccGGCGCg -3'
miRNA:   3'- gGUGGC--UCCCGcACaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 88239 0.68 0.835731
Target:  5'- -aGCCGAGgccGGCGcg-GCGCggGGCGCc -3'
miRNA:   3'- ggUGGCUC---CCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 87911 0.67 0.881572
Target:  5'- gCACaggggcGGGGCGUGgg-GCUgGGCGCg -3'
miRNA:   3'- gGUGgc----UCCCGCACaugUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 87842 0.67 0.867116
Target:  5'- aCGCCGGcGGGCGUGauggccCGCgggccugUGGuCGCu -3'
miRNA:   3'- gGUGGCU-CCCGCACau----GUGa------ACC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 87594 0.66 0.907808
Target:  5'- cUCACCGAGgccGGCGccGUugAgacggcggcUUUGGCGCc -3'
miRNA:   3'- -GGUGGCUC---CCGCa-CAugU---------GAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 86737 0.79 0.25125
Target:  5'- cCCGCgGAGGGCGaUGUgucGCGCU-GGCGUg -3'
miRNA:   3'- -GGUGgCUCCCGC-ACA---UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 86196 0.71 0.675987
Target:  5'- gCACCGGGGGCG-GUccagucGCGCgccuGCGCc -3'
miRNA:   3'- gGUGGCUCCCGCaCA------UGUGaac-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 85769 0.72 0.578285
Target:  5'- aCGCCGGGGGCagcggccgaugcgGUGCGCgucgagGGUGCg -3'
miRNA:   3'- gGUGGCUCCCGca-----------CAUGUGaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 85358 0.68 0.827407
Target:  5'- gCAcCCGGGGGCGUGgcaagcguCGCca-GCGCg -3'
miRNA:   3'- gGU-GGCUCCCGCACau------GUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 85168 0.75 0.447699
Target:  5'- cUCGCgGAGGGCGUGcacggccUGCGCguacucGGCGCc -3'
miRNA:   3'- -GGUGgCUCCCGCAC-------AUGUGaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 84373 0.66 0.895147
Target:  5'- aCGCCGAgcGGGCuc---CGCgUUGGCGCg -3'
miRNA:   3'- gGUGGCU--CCCGcacauGUG-AACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 84178 0.7 0.726018
Target:  5'- gCCGCCGAcuGGGCGUcGUGCGCca-GCaGCc -3'
miRNA:   3'- -GGUGGCU--CCCGCA-CAUGUGaacCG-CG- -5'
6363 3' -55.9 NC_001847.1 + 83959 0.7 0.73582
Target:  5'- -gGCCGGGGGCGgagacGUguaccguaccGCGCgaaGGCGCc -3'
miRNA:   3'- ggUGGCUCCCGCa----CA----------UGUGaa-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.