miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 83316 0.66 0.888472
Target:  5'- gCGCaCGGGGGC------GCUUGGCGCc -3'
miRNA:   3'- gGUG-GCUCCCGcacaugUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 83266 0.71 0.655662
Target:  5'- gCGgCGGGGGCGg--GCGCagaGGCGCa -3'
miRNA:   3'- gGUgGCUCCCGCacaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 83141 0.66 0.913789
Target:  5'- gCCGCCGcggcgucGGGCGcGUcCGCgaugcgccGGCGCa -3'
miRNA:   3'- -GGUGGCu------CCCGCaCAuGUGaa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 83018 0.68 0.835731
Target:  5'- uCCGCUGGGGcgccgccggcccGCGgccgcuaGUGCGCUUGGgcCGCg -3'
miRNA:   3'- -GGUGGCUCC------------CGCa------CAUGUGAACC--GCG- -5'
6363 3' -55.9 NC_001847.1 + 82490 0.75 0.457768
Target:  5'- gCCGCCGAaGGCGUagGU-CGCgucUGGCGCg -3'
miRNA:   3'- -GGUGGCUcCCGCA--CAuGUGa--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 82329 0.71 0.665838
Target:  5'- aCGcCCGAGGuccaGUGUGCGCggcgccagGGCGCa -3'
miRNA:   3'- gGU-GGCUCCcg--CACAUGUGaa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 81046 0.69 0.745531
Target:  5'- aCugCGGGGGCGacGUGgGCgugGGCGg -3'
miRNA:   3'- gGugGCUCCCGCa-CAUgUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 80187 0.7 0.702185
Target:  5'- gCCGCCGccucugcGGGCGgGUGCGCcgcgaagcgcagGGCGCu -3'
miRNA:   3'- -GGUGGCu------CCCGCaCAUGUGaa----------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 79997 0.68 0.810236
Target:  5'- gCCGCUGGGGGgcucuaCGcGcGCGCguuUGGCGCg -3'
miRNA:   3'- -GGUGGCUCCC------GCaCaUGUGa--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 79604 0.71 0.634242
Target:  5'- gCGCCGGGGGCGuUGUcgccggucgccccGCGgcgGGCGCc -3'
miRNA:   3'- gGUGGCUCCCGC-ACA-------------UGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 79547 0.67 0.874452
Target:  5'- -gGCCGGGGGgGcUGgggcuCGCggggGGCGCc -3'
miRNA:   3'- ggUGGCUCCCgC-ACau---GUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 79429 0.67 0.859569
Target:  5'- gCGcCCGAGGGCGgcggGcACACgaagaaGCGCg -3'
miRNA:   3'- gGU-GGCUCCCGCa---CaUGUGaac---CGCG- -5'
6363 3' -55.9 NC_001847.1 + 78666 0.72 0.594496
Target:  5'- gCCugCGucgccGGCGUGcGCACgcgGGCGCu -3'
miRNA:   3'- -GGugGCuc---CCGCACaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 78408 0.69 0.764648
Target:  5'- gCCGCUGcGGGC----GCGCUgcUGGCGCg -3'
miRNA:   3'- -GGUGGCuCCCGcacaUGUGA--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 78295 0.66 0.894489
Target:  5'- gCCGCCGGGcgcagacGGCGcg-GCGC--GGCGCg -3'
miRNA:   3'- -GGUGGCUC-------CCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77929 0.66 0.913789
Target:  5'- -gACCGGcGGGCGgcUGUagcaaACGCcgccgGGCGCg -3'
miRNA:   3'- ggUGGCU-CCCGC--ACA-----UGUGaa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77685 0.71 0.662788
Target:  5'- -gGCCGAGcgcuucaaggcGGCGUgcgcgcgcgcgcugGUgcGCGCUUGGCGCg -3'
miRNA:   3'- ggUGGCUC-----------CCGCA--------------CA--UGUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77540 0.68 0.801406
Target:  5'- -aGCgCGAGGGCGUggcgcacccucGUGCGCUUuccgcGGcCGCg -3'
miRNA:   3'- ggUG-GCUCCCGCA-----------CAUGUGAA-----CC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 77464 0.66 0.901593
Target:  5'- -gGCUG-GGGCGg--GCGCcgGGCGCc -3'
miRNA:   3'- ggUGGCuCCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77346 0.66 0.919534
Target:  5'- gCUGCUGGGcGGCGacacgccGUGCgACgcgUGGCGCc -3'
miRNA:   3'- -GGUGGCUC-CCGCa------CAUG-UGa--ACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.