miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 52279 0.7 0.726018
Target:  5'- cCCGCgCGccGGCuuuGUGUGCGCgaccgcgGGCGCg -3'
miRNA:   3'- -GGUG-GCucCCG---CACAUGUGaa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 8626 0.69 0.745531
Target:  5'- cCCGCCGGGGGaGcGgcCGCUgcggacucgGGCGCc -3'
miRNA:   3'- -GGUGGCUCCCgCaCauGUGAa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 100868 0.75 0.457768
Target:  5'- cCCGCCGGGGGuCGgcgGCAgg-GGCGCg -3'
miRNA:   3'- -GGUGGCUCCC-GCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 32161 0.73 0.554162
Target:  5'- aCGCCGcgacGGCGUGcgcgGCggaGCUUGGCGCg -3'
miRNA:   3'- gGUGGCuc--CCGCACa---UG---UGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 65731 0.72 0.584354
Target:  5'- cCCGCCGGGGcggcgcucgagaGCGUGgugGCcCgcgGGCGCa -3'
miRNA:   3'- -GGUGGCUCC------------CGCACa--UGuGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30237 0.72 0.594496
Target:  5'- -gGCCGAGGugcGCGUGU-CGCUggcGGCGUu -3'
miRNA:   3'- ggUGGCUCC---CGCACAuGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30646 0.71 0.635263
Target:  5'- gCCGCCGaAGaGGCG-GUGC---UGGCGCu -3'
miRNA:   3'- -GGUGGC-UC-CCGCaCAUGugaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77685 0.71 0.662788
Target:  5'- -gGCCGAGcgcuucaaggcGGCGUgcgcgcgcgcgcugGUgcGCGCUUGGCGCg -3'
miRNA:   3'- ggUGGCUC-----------CCGCA--------------CA--UGUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 122914 0.71 0.6861
Target:  5'- cUCGCCGuucGGGUGUGcGCGCgccGCGCa -3'
miRNA:   3'- -GGUGGCu--CCCGCACaUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 122560 0.7 0.705185
Target:  5'- gCCGCacgagugCGAGGGCGccgcGUACGC--GGCGCc -3'
miRNA:   3'- -GGUG-------GCUCCCGCa---CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 132282 0.67 0.84387
Target:  5'- cCCGCgCGucGGCcUGgGCGC-UGGCGCg -3'
miRNA:   3'- -GGUG-GCucCCGcACaUGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 85358 0.68 0.827407
Target:  5'- gCAcCCGGGGGCGUGgcaagcguCGCca-GCGCg -3'
miRNA:   3'- gGU-GGCUCCCGCACau------GUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 61552 0.69 0.755143
Target:  5'- gCCGCCGGcaacGGCacgGUGCGCgaGGUGCa -3'
miRNA:   3'- -GGUGGCUc---CCGca-CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 78408 0.69 0.764648
Target:  5'- gCCGCUGcGGGC----GCGCUgcUGGCGCg -3'
miRNA:   3'- -GGUGGCuCCCGcacaUGUGA--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 51066 0.69 0.774036
Target:  5'- gCCACCGA-GGCGUucGUGCGCg-GGCu- -3'
miRNA:   3'- -GGUGGCUcCCGCA--CAUGUGaaCCGcg -5'
6363 3' -55.9 NC_001847.1 + 74337 0.68 0.801406
Target:  5'- gCUGCCGcAGGcGCGc--GCGCUggUGGCGCg -3'
miRNA:   3'- -GGUGGC-UCC-CGCacaUGUGA--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 31673 0.68 0.801406
Target:  5'- gCC-CCGAGGaGCuaagggcggccGUGUcuGCGCUguacGGCGCg -3'
miRNA:   3'- -GGuGGCUCC-CG-----------CACA--UGUGAa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 37186 0.68 0.807604
Target:  5'- gCGCCGGGagagcccggugcgaGGCGcccgGUGcCGCUUGGCGg -3'
miRNA:   3'- gGUGGCUC--------------CCGCa---CAU-GUGAACCGCg -5'
6363 3' -55.9 NC_001847.1 + 36833 0.68 0.818906
Target:  5'- gCCgACUGGGGGCuGgcggacGUGCGCUcGGCGg -3'
miRNA:   3'- -GG-UGGCUCCCG-Ca-----CAUGUGAaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 119913 0.68 0.818906
Target:  5'- gCCGCCGccGGCGcGUacuucgucuauACGCgccGGCGCg -3'
miRNA:   3'- -GGUGGCucCCGCaCA-----------UGUGaa-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.