miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 33341 0.69 0.764648
Target:  5'- gCgGCCuGGGuGGCGcUGcUGCACgaGGCGCa -3'
miRNA:   3'- -GgUGG-CUC-CCGC-AC-AUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 130621 0.69 0.768418
Target:  5'- gCCACCGAGGGCGccgaggccgaagACGCggagaucGGCGa -3'
miRNA:   3'- -GGUGGCUCCCGCaca---------UGUGaa-----CCGCg -5'
6363 3' -55.9 NC_001847.1 + 446 0.69 0.792424
Target:  5'- aCUACCGcGGGCGUccGCucucacuaGCUUcGGCGCc -3'
miRNA:   3'- -GGUGGCuCCCGCAcaUG--------UGAA-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77540 0.68 0.801406
Target:  5'- -aGCgCGAGGGCGUggcgcacccucGUGCGCUUuccgcGGcCGCg -3'
miRNA:   3'- ggUG-GCUCCCGCA-----------CAUGUGAA-----CC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 36396 0.68 0.801406
Target:  5'- gCGCCGc-GGCGacgGUGCACUcGcGCGCa -3'
miRNA:   3'- gGUGGCucCCGCa--CAUGUGAaC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 36833 0.68 0.818906
Target:  5'- gCCgACUGGGGGCuGgcggacGUGCGCUcGGCGg -3'
miRNA:   3'- -GG-UGGCUCCCG-Ca-----CAUGUGAaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 119913 0.68 0.818906
Target:  5'- gCCGCCGccGGCGcGUacuucgucuauACGCgccGGCGCg -3'
miRNA:   3'- -GGUGGCucCCGCaCA-----------UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 122560 0.7 0.705185
Target:  5'- gCCGCacgagugCGAGGGCGccgcGUACGC--GGCGCc -3'
miRNA:   3'- -GGUG-------GCUCCCGCa---CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 122914 0.71 0.6861
Target:  5'- cUCGCCGuucGGGUGUGcGCGCgccGCGCa -3'
miRNA:   3'- -GGUGGCu--CCCGCACaUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77685 0.71 0.662788
Target:  5'- -gGCCGAGcgcuucaaggcGGCGUgcgcgcgcgcgcugGUgcGCGCUUGGCGCg -3'
miRNA:   3'- ggUGGCUC-----------CCGCA--------------CA--UGUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 54536 0.67 0.859569
Target:  5'- gCCGuCCGGGGGCGcagACGgCgggggcGGCGCg -3'
miRNA:   3'- -GGU-GGCUCCCGCacaUGU-Gaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 60859 0.67 0.867116
Target:  5'- gCGCC-AGGGCGUccaGCGCggGGCGg -3'
miRNA:   3'- gGUGGcUCCCGCAca-UGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 43003 0.67 0.874452
Target:  5'- gCCGCCGGGGGgGc--GCGCcgGGcCGCc -3'
miRNA:   3'- -GGUGGCUCCCgCacaUGUGaaCC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 22291 0.67 0.881572
Target:  5'- gCCGCCGAGGcCGac-ACGCUgaUGGgGCu -3'
miRNA:   3'- -GGUGGCUCCcGCacaUGUGA--ACCgCG- -5'
6363 3' -55.9 NC_001847.1 + 113485 0.67 0.881572
Target:  5'- gUCGCCGGGGGgcucgcccucCG-GUcGCGCccgGGCGCg -3'
miRNA:   3'- -GGUGGCUCCC----------GCaCA-UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 100868 0.75 0.457768
Target:  5'- cCCGCCGGGGGuCGgcgGCAgg-GGCGCg -3'
miRNA:   3'- -GGUGGCUCCC-GCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 32161 0.73 0.554162
Target:  5'- aCGCCGcgacGGCGUGcgcgGCggaGCUUGGCGCg -3'
miRNA:   3'- gGUGGCuc--CCGCACa---UG---UGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 65731 0.72 0.584354
Target:  5'- cCCGCCGGGGcggcgcucgagaGCGUGgugGCcCgcgGGCGCa -3'
miRNA:   3'- -GGUGGCUCC------------CGCACa--UGuGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30237 0.72 0.594496
Target:  5'- -gGCCGAGGugcGCGUGU-CGCUggcGGCGUu -3'
miRNA:   3'- ggUGGCUCC---CGCACAuGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30646 0.71 0.635263
Target:  5'- gCCGCCGaAGaGGCG-GUGC---UGGCGCu -3'
miRNA:   3'- -GGUGGC-UC-CCGCaCAUGugaACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.