miRNA display CGI


Results 121 - 140 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 122914 0.71 0.6861
Target:  5'- cUCGCCGuucGGGUGUGcGCGCgccGCGCa -3'
miRNA:   3'- -GGUGGCu--CCCGCACaUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 27313 0.7 0.700182
Target:  5'- -uGCCGGcGGGCGUGUcCACggcaaucugccggGGCGUg -3'
miRNA:   3'- ggUGGCU-CCCGCACAuGUGaa-----------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 62486 0.66 0.888472
Target:  5'- gUCGCCGGcGGGCGgc--CGCggggUGGCGg -3'
miRNA:   3'- -GGUGGCU-CCCGCacauGUGa---ACCGCg -5'
6363 3' -55.9 NC_001847.1 + 113021 0.66 0.887792
Target:  5'- gCCGCCGggcccAGGGCGcgcccgcUGU-CGCccccGGCGCg -3'
miRNA:   3'- -GGUGGC-----UCCCGC-------ACAuGUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 69333 0.67 0.881572
Target:  5'- -gGCCucGGGCGcugcUGgcgGCGCUggugcUGGCGCg -3'
miRNA:   3'- ggUGGcuCCCGC----ACa--UGUGA-----ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 53258 0.7 0.73582
Target:  5'- gCCGCCucggcGGGGCGcUGcGCGCccaGGCGCg -3'
miRNA:   3'- -GGUGGc----UCCCGC-ACaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 131345 0.69 0.745531
Target:  5'- gCCGCCGcccGGcCGcGUGCGCUUcggcGGCGCg -3'
miRNA:   3'- -GGUGGCuc-CC-GCaCAUGUGAA----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 61552 0.69 0.755143
Target:  5'- gCCGCCGGcaacGGCacgGUGCGCgaGGUGCa -3'
miRNA:   3'- -GGUGGCUc---CCGca-CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77227 0.69 0.764648
Target:  5'- gCCGCCGGGcccggacuuGGCGcgGU-CGCgcgGGCGCu -3'
miRNA:   3'- -GGUGGCUC---------CCGCa-CAuGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 51066 0.69 0.774036
Target:  5'- gCCACCGA-GGCGUucGUGCGCg-GGCu- -3'
miRNA:   3'- -GGUGGCUcCCGCA--CAUGUGaaCCGcg -5'
6363 3' -55.9 NC_001847.1 + 57660 0.68 0.801406
Target:  5'- gCGCCGucGGGCaggcgGUGgGCACggUGGUGCu -3'
miRNA:   3'- gGUGGCu-CCCG-----CACaUGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 31673 0.68 0.801406
Target:  5'- gCC-CCGAGGaGCuaagggcggccGUGUcuGCGCUguacGGCGCg -3'
miRNA:   3'- -GGuGGCUCC-CG-----------CACA--UGUGAa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 131700 0.68 0.810236
Target:  5'- gCGCUGuGGGCGcUGccGCACgUGGCGg -3'
miRNA:   3'- gGUGGCuCCCGC-ACa-UGUGaACCGCg -5'
6363 3' -55.9 NC_001847.1 + 36833 0.68 0.818906
Target:  5'- gCCgACUGGGGGCuGgcggacGUGCGCUcGGCGg -3'
miRNA:   3'- -GG-UGGCUCCCG-Ca-----CAUGUGAaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 59492 0.68 0.826564
Target:  5'- cCCAgCCGgcAGGGgGUGcGCcgaggccgcaccgGCUUGGUGCg -3'
miRNA:   3'- -GGU-GGC--UCCCgCACaUG-------------UGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 85358 0.68 0.827407
Target:  5'- gCAcCCGGGGGCGUGgcaagcguCGCca-GCGCg -3'
miRNA:   3'- gGU-GGCUCCCGCACau------GUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 35173 0.67 0.858803
Target:  5'- aCCGCCGGGGGCacgcggccuucgaGgagGaGCGCgcgcggcugGGCGCc -3'
miRNA:   3'- -GGUGGCUCCCG-------------Ca--CaUGUGaa-------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 36008 0.67 0.859569
Target:  5'- gCgGCCGcGGGCGUGgu-GCUggGGCuGCg -3'
miRNA:   3'- -GgUGGCuCCCGCACaugUGAa-CCG-CG- -5'
6363 3' -55.9 NC_001847.1 + 87842 0.67 0.867116
Target:  5'- aCGCCGGcGGGCGUGauggccCGCgggccugUGGuCGCu -3'
miRNA:   3'- gGUGGCU-CCCGCACau----GUGa------ACC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 34661 0.67 0.88087
Target:  5'- gCGCCGAGGgggcggccgcgcaGCGgcaggagGaGCGC-UGGCGCg -3'
miRNA:   3'- gGUGGCUCC-------------CGCa------CaUGUGaACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.