miRNA display CGI


Results 141 - 160 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 83018 0.68 0.835731
Target:  5'- uCCGCUGGGGcgccgccggcccGCGgccgcuaGUGCGCUUGGgcCGCg -3'
miRNA:   3'- -GGUGGCUCC------------CGCa------CAUGUGAACC--GCG- -5'
6363 3' -55.9 NC_001847.1 + 3795 0.68 0.827407
Target:  5'- gCUGCaCGAcGGCGUGccgGCACggGGCGUc -3'
miRNA:   3'- -GGUG-GCUcCCGCACa--UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 83316 0.66 0.888472
Target:  5'- gCGCaCGGGGGC------GCUUGGCGCc -3'
miRNA:   3'- gGUG-GCUCCCGcacaugUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 101464 0.66 0.895147
Target:  5'- gCCGCCGcgcggccgcaAGGGCG-GcGCGCUagcgaccgaGGCGCc -3'
miRNA:   3'- -GGUGGC----------UCCCGCaCaUGUGAa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77227 0.69 0.764648
Target:  5'- gCCGCCGGGcccggacuuGGCGcgGU-CGCgcgGGCGCu -3'
miRNA:   3'- -GGUGGCUC---------CCGCa-CAuGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 66638 0.75 0.448609
Target:  5'- aCGgCGGGGGCGcguuUGUGgACUgccUGGCGCg -3'
miRNA:   3'- gGUgGCUCCCGC----ACAUgUGA---ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 41712 0.74 0.49536
Target:  5'- aCACCGAgggccaGGGCGUGUACAgCgccGuGCGCu -3'
miRNA:   3'- gGUGGCU------CCCGCACAUGU-Gaa-C-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 46610 0.67 0.847073
Target:  5'- gCCACgcgcacacacguuuaCGAGGGCGa----ACUUGGCGUc -3'
miRNA:   3'- -GGUG---------------GCUCCCGCacaugUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95758 0.75 0.448609
Target:  5'- gCGCgGGGGGCGgcgcgGgcCGCUcUGGCGCg -3'
miRNA:   3'- gGUGgCUCCCGCa----CauGUGA-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95704 0.75 0.448609
Target:  5'- gCGCgGGGGGCGgcgcgGgcCGCUcUGGCGCg -3'
miRNA:   3'- gGUGgCUCCCGCa----CauGUGA-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 78295 0.66 0.894489
Target:  5'- gCCGCCGGGcgcagacGGCGcg-GCGC--GGCGCg -3'
miRNA:   3'- -GGUGGCUC-------CCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 120693 0.66 0.888472
Target:  5'- aCGCCGAGcagcGCGgccGcGCGCUcGGCGCc -3'
miRNA:   3'- gGUGGCUCc---CGCa--CaUGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 22107 0.72 0.574247
Target:  5'- gCGCCGGGGGCG---ACAgcgGGCGCg -3'
miRNA:   3'- gGUGGCUCCCGCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 116437 0.76 0.387507
Target:  5'- -gGCuCGAGGGCgGUGgGCGC-UGGCGCa -3'
miRNA:   3'- ggUG-GCUCCCG-CACaUGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 48452 0.75 0.443163
Target:  5'- gCACCGAGGGCGUGaaggugaggcaaaaGCGCgcGGCGa -3'
miRNA:   3'- gGUGGCUCCCGCACa-------------UGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 102125 0.67 0.851819
Target:  5'- gCGgaGAGGGCGgcgGCACUccGCGCg -3'
miRNA:   3'- gGUggCUCCCGCacaUGUGAacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95650 0.75 0.448609
Target:  5'- gCGCgGGGGGCGgcgcgGgcCGCUcUGGCGCg -3'
miRNA:   3'- gGUGgCUCCCGCa----CauGUGA-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 21767 0.66 0.907808
Target:  5'- gCCGCCGGcgccGGGCccg-GCGCcggccgGGCGCg -3'
miRNA:   3'- -GGUGGCU----CCCGcacaUGUGaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 75916 0.67 0.84387
Target:  5'- aUCGCCGAcGGccgacGCGUGcaaGCGCacGGCGCg -3'
miRNA:   3'- -GGUGGCU-CC-----CGCACa--UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 74123 0.67 0.84387
Target:  5'- gCGCCcGGGGaUGUG-ACGCgcGGCGCc -3'
miRNA:   3'- gGUGGcUCCC-GCACaUGUGaaCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.