Results 41 - 60 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 3' | -55.9 | NC_001847.1 | + | 42117 | 0.66 | 0.913789 |
Target: 5'- gCGCCGGGGGCcgcuuccCGCgUUGGCGa -3' miRNA: 3'- gGUGGCUCCCGcacau--GUG-AACCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 77929 | 0.66 | 0.913789 |
Target: 5'- -gACCGGcGGGCGgcUGUagcaaACGCcgccgGGCGCg -3' miRNA: 3'- ggUGGCU-CCCGC--ACA-----UGUGaa---CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 125506 | 0.66 | 0.913789 |
Target: 5'- gCUGCuCGAGcGGCGggccgGCGCggcggcgGGCGCa -3' miRNA: 3'- -GGUG-GCUC-CCGCaca--UGUGaa-----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 83141 | 0.66 | 0.913789 |
Target: 5'- gCCGCCGcggcgucGGGCGcGUcCGCgaugcgccGGCGCa -3' miRNA: 3'- -GGUGGCu------CCCGCaCAuGUGaa------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 33568 | 0.66 | 0.919534 |
Target: 5'- aCGCgGGGGGCGUcugGCGCggcccgGGCucgGCg -3' miRNA: 3'- gGUGgCUCCCGCAca-UGUGaa----CCG---CG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 21767 | 0.66 | 0.907808 |
Target: 5'- gCCGCCGGcgccGGGCccg-GCGCcggccgGGCGCg -3' miRNA: 3'- -GGUGGCU----CCCGcacaUGUGaa----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 28091 | 0.66 | 0.907808 |
Target: 5'- -gGCgGGGGGCGgcgGUGCcCUcGGgGCc -3' miRNA: 3'- ggUGgCUCCCGCa--CAUGuGAaCCgCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 25986 | 0.66 | 0.895147 |
Target: 5'- -gACC-AGGGCGggcgGgcggGCGCgcaGGCGCg -3' miRNA: 3'- ggUGGcUCCCGCa---Ca---UGUGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 3910 | 0.66 | 0.895147 |
Target: 5'- gCCAgCGcGGGCGccgGUugcgcgcccGCGCU-GGCGCc -3' miRNA: 3'- -GGUgGCuCCCGCa--CA---------UGUGAaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 23391 | 0.66 | 0.895147 |
Target: 5'- -gGCUGGguGGGCGgagcuCACUUGGCGg -3' miRNA: 3'- ggUGGCU--CCCGCacau-GUGAACCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 35558 | 0.66 | 0.895147 |
Target: 5'- gCGCCaAGcuuGGCGUGcGCGCUUuggagcggcgccGGCGCa -3' miRNA: 3'- gGUGGcUC---CCGCACaUGUGAA------------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 41804 | 0.66 | 0.895147 |
Target: 5'- gCCGCgcgcuaCGAGGaCGUG-GCGCgggaUUGGCGCg -3' miRNA: 3'- -GGUG------GCUCCcGCACaUGUG----AACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 99497 | 0.66 | 0.895147 |
Target: 5'- gCCGCCGAGgcGGCGcgGUccaGCGCUggccccaGCGCc -3' miRNA: 3'- -GGUGGCUC--CCGCa-CA---UGUGAac-----CGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 51669 | 0.66 | 0.895147 |
Target: 5'- cCCGCaacAGGGCGgcGUACGCgc-GCGCc -3' miRNA: 3'- -GGUGgc-UCCCGCa-CAUGUGaacCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 84373 | 0.66 | 0.895147 |
Target: 5'- aCGCCGAgcGGGCuc---CGCgUUGGCGCg -3' miRNA: 3'- gGUGGCU--CCCGcacauGUG-AACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 105699 | 0.66 | 0.895802 |
Target: 5'- uCgGCCGcGGGCGgcgccacgccccaGCGCUcgcUGGCGCg -3' miRNA: 3'- -GgUGGCuCCCGCaca----------UGUGA---ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 50573 | 0.66 | 0.901593 |
Target: 5'- gUCGCCucugacgacgagGAGGcCGUGUACGa--GGCGCa -3' miRNA: 3'- -GGUGG------------CUCCcGCACAUGUgaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 62135 | 0.66 | 0.901593 |
Target: 5'- gUCugUGAGcGGCGUGcGCA--UGGcCGCg -3' miRNA: 3'- -GGugGCUC-CCGCACaUGUgaACC-GCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 132826 | 0.66 | 0.901593 |
Target: 5'- uCCGCgcaGcGGGCGUGUcgccauggGCAgccgucuuggacUUUGGCGCg -3' miRNA: 3'- -GGUGg--CuCCCGCACA--------UGU------------GAACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 95323 | 0.66 | 0.901593 |
Target: 5'- gCGCCGgcAGGGCcgaagGCGCagggGGCGCa -3' miRNA: 3'- gGUGGC--UCCCGcaca-UGUGaa--CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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