miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 50573 0.66 0.901593
Target:  5'- gUCGCCucugacgacgagGAGGcCGUGUACGa--GGCGCa -3'
miRNA:   3'- -GGUGG------------CUCCcGCACAUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 105699 0.66 0.895802
Target:  5'- uCgGCCGcGGGCGgcgccacgccccaGCGCUcgcUGGCGCg -3'
miRNA:   3'- -GgUGGCuCCCGCaca----------UGUGA---ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 44287 0.66 0.888472
Target:  5'- aCACCGGcGGCGcg-GCGC--GGCGCg -3'
miRNA:   3'- gGUGGCUcCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 120871 0.66 0.888472
Target:  5'- gCCGCgGcGGGaaaGUG-GCGCUUGGCa- -3'
miRNA:   3'- -GGUGgCuCCCg--CACaUGUGAACCGcg -5'
6363 3' -55.9 NC_001847.1 + 30476 0.66 0.888472
Target:  5'- gCGCCGAcucgcacgccuGGGCcgg-GCGCUggacgGGCGCg -3'
miRNA:   3'- gGUGGCU-----------CCCGcacaUGUGAa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 14223 0.66 0.888472
Target:  5'- cCgGCCGGGGGCGUGgugag--GGCa- -3'
miRNA:   3'- -GgUGGCUCCCGCACaugugaaCCGcg -5'
6363 3' -55.9 NC_001847.1 + 10208 0.66 0.887792
Target:  5'- gCCGCCGggcccAGGGCGcgcccgcUGU-CGCccccGGCGCg -3'
miRNA:   3'- -GGUGGC-----UCCCGC-------ACAuGUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 107666 0.67 0.881572
Target:  5'- gCCGCCGAagccGGCGUGcaguCAgUgacGGCGCc -3'
miRNA:   3'- -GGUGGCUc---CCGCACau--GUgAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 102603 0.67 0.881572
Target:  5'- gCGCCGAGGGC---UGCGC---GCGCa -3'
miRNA:   3'- gGUGGCUCCCGcacAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30317 0.67 0.881572
Target:  5'- aCC-CCGAGGaCGUGcGCGuggUGGUGCu -3'
miRNA:   3'- -GGuGGCUCCcGCACaUGUga-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 120693 0.66 0.888472
Target:  5'- aCGCCGAGcagcGCGgccGcGCGCUcGGCGCc -3'
miRNA:   3'- gGUGGCUCc---CGCa--CaUGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 78295 0.66 0.894489
Target:  5'- gCCGCCGGGcgcagacGGCGcg-GCGC--GGCGCg -3'
miRNA:   3'- -GGUGGCUC-------CCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 84373 0.66 0.895147
Target:  5'- aCGCCGAgcGGGCuc---CGCgUUGGCGCg -3'
miRNA:   3'- gGUGGCU--CCCGcacauGUG-AACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 51669 0.66 0.895147
Target:  5'- cCCGCaacAGGGCGgcGUACGCgc-GCGCc -3'
miRNA:   3'- -GGUGgc-UCCCGCa-CAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 99497 0.66 0.895147
Target:  5'- gCCGCCGAGgcGGCGcgGUccaGCGCUggccccaGCGCc -3'
miRNA:   3'- -GGUGGCUC--CCGCa-CA---UGUGAac-----CGCG- -5'
6363 3' -55.9 NC_001847.1 + 41804 0.66 0.895147
Target:  5'- gCCGCgcgcuaCGAGGaCGUG-GCGCgggaUUGGCGCg -3'
miRNA:   3'- -GGUG------GCUCCcGCACaUGUG----AACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 35558 0.66 0.895147
Target:  5'- gCGCCaAGcuuGGCGUGcGCGCUUuggagcggcgccGGCGCa -3'
miRNA:   3'- gGUGGcUC---CCGCACaUGUGAA------------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 23391 0.66 0.895147
Target:  5'- -gGCUGGguGGGCGgagcuCACUUGGCGg -3'
miRNA:   3'- ggUGGCU--CCCGCacau-GUGAACCGCg -5'
6363 3' -55.9 NC_001847.1 + 3910 0.66 0.895147
Target:  5'- gCCAgCGcGGGCGccgGUugcgcgcccGCGCU-GGCGCc -3'
miRNA:   3'- -GGUgGCuCCCGCa--CA---------UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 25986 0.66 0.895147
Target:  5'- -gACC-AGGGCGggcgGgcggGCGCgcaGGCGCg -3'
miRNA:   3'- ggUGGcUCCCGCa---Ca---UGUGaa-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.