Results 121 - 140 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 3' | -55.9 | NC_001847.1 | + | 10672 | 0.67 | 0.881572 |
Target: 5'- gUCGCCGGGGGgcucgcccucCG-GUcGCGCccgGGCGCg -3' miRNA: 3'- -GGUGGCUCCC----------GCaCA-UGUGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 134518 | 0.67 | 0.881572 |
Target: 5'- gCgGCCGc-GGCGcauguggugGUACACggGGCGCg -3' miRNA: 3'- -GgUGGCucCCGCa--------CAUGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 118158 | 0.67 | 0.874452 |
Target: 5'- uCC-CCGAgGGGCGcGUcucccuGCGCUggacGGUGCg -3' miRNA: 3'- -GGuGGCU-CCCGCaCA------UGUGAa---CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 115704 | 0.67 | 0.874452 |
Target: 5'- -aGCCGGcuGcGGCccGUGUGCGCUUgccgccacgGGCGCg -3' miRNA: 3'- ggUGGCU--C-CCG--CACAUGUGAA---------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 36189 | 0.67 | 0.877326 |
Target: 5'- aCGCCGuGGcGCGUGggcuCGCUgaagauauaaggcgGGUGCu -3' miRNA: 3'- gGUGGCuCC-CGCACau--GUGAa-------------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 98861 | 0.67 | 0.88087 |
Target: 5'- aCCAgcagaucCCGgaAGGGCGcGUGCGCcugGGCGg -3' miRNA: 3'- -GGU-------GGC--UCCCGCaCAUGUGaa-CCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 1634 | 0.67 | 0.881572 |
Target: 5'- gCACCGcGGcGCGcagGUACACgu-GCGCc -3' miRNA: 3'- gGUGGCuCC-CGCa--CAUGUGaacCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 116068 | 0.67 | 0.881572 |
Target: 5'- gCACCG-GGGCGcacuuuCGCacGGCGCu -3' miRNA: 3'- gGUGGCuCCCGCacau--GUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 85769 | 0.72 | 0.578285 |
Target: 5'- aCGCCGGGGGCagcggccgaugcgGUGCGCgucgagGGUGCg -3' miRNA: 3'- gGUGGCUCCCGca-----------CAUGUGaa----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 124920 | 0.72 | 0.574247 |
Target: 5'- gCGCCGGGGGCG---ACAgcgGGCGCg -3' miRNA: 3'- gGUGGCUCCCGCacaUGUgaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 52025 | 0.72 | 0.574247 |
Target: 5'- gCCGCCGAGGaG-GUGcUACGCgaGGCGg -3' miRNA: 3'- -GGUGGCUCC-CgCAC-AUGUGaaCCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 32161 | 0.73 | 0.554162 |
Target: 5'- aCGCCGcgacGGCGUGcgcgGCggaGCUUGGCGCg -3' miRNA: 3'- gGUGGCuc--CCGCACa---UG---UGAACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 31210 | 0.73 | 0.554162 |
Target: 5'- cUCGCUGAGGGCGcGgcguggGCGCgcgaaagcggGGCGCg -3' miRNA: 3'- -GGUGGCUCCCGCaCa-----UGUGaa--------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 35304 | 0.74 | 0.504978 |
Target: 5'- cCCGCCGAGcGGCGc--GCGCUggaagcgGGCGUg -3' miRNA: 3'- -GGUGGCUC-CCGCacaUGUGAa------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 100868 | 0.75 | 0.457768 |
Target: 5'- cCCGCCGGGGGuCGgcgGCAgg-GGCGCg -3' miRNA: 3'- -GGUGGCUCCC-GCacaUGUgaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 88808 | 0.75 | 0.457768 |
Target: 5'- gCCGCCGAcgcggcccgcGGGCGgccgUGcUGCGCUcGGCGCu -3' miRNA: 3'- -GGUGGCU----------CCCGC----AC-AUGUGAaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 85168 | 0.75 | 0.447699 |
Target: 5'- cUCGCgGAGGGCGUGcacggccUGCGCguacucGGCGCc -3' miRNA: 3'- -GGUGgCUCCCGCAC-------AUGUGaa----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 88900 | 0.77 | 0.324721 |
Target: 5'- cCCGCCGGGGGCGgcu-CcCUUGcGCGCg -3' miRNA: 3'- -GGUGGCUCCCGCacauGuGAAC-CGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 39244 | 0.78 | 0.303208 |
Target: 5'- aCCACCGucaGGCG-GUGCGCUUGGCu- -3' miRNA: 3'- -GGUGGCuc-CCGCaCAUGUGAACCGcg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 60460 | 0.66 | 0.919534 |
Target: 5'- gCCcCCGucGGGCGcGUcCGCcaUGGCGCc -3' miRNA: 3'- -GGuGGCu-CCCGCaCAuGUGa-ACCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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