miRNA display CGI


Results 101 - 120 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 90477 0.67 0.875452
Target:  5'- cGGCucGCC-GGUCACGGUGCA-GG-CGg -3'
miRNA:   3'- cCCG--UGGuUCAGUGUCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 106077 0.67 0.895712
Target:  5'- gGGGCGCCGgcgccgcgcggccGGcgagCACGGCGCGcAGcUCGg -3'
miRNA:   3'- -CCCGUGGU-------------UCa---GUGUCGCGU-UCcAGC- -5'
6363 5' -55 NC_001847.1 + 124715 0.67 0.894377
Target:  5'- cGGGCGCgGGGgcgGCAGCGCGaaccgcgcgggggaGGGcCGu -3'
miRNA:   3'- -CCCGUGgUUCag-UGUCGCGU--------------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 48987 0.67 0.889632
Target:  5'- cGGCcucACCGGGggaggggC-CGGCGCGAGGUUa -3'
miRNA:   3'- cCCG---UGGUUCa------GuGUCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 58898 0.67 0.868024
Target:  5'- aGGuGCGCCuc--CAUGGCGUcGGGUCGg -3'
miRNA:   3'- -CC-CGUGGuucaGUGUCGCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 61996 0.67 0.868024
Target:  5'- uGGGC-CCGAagaGCGGCGCGGGGcccugCGg -3'
miRNA:   3'- -CCCGuGGUUcagUGUCGCGUUCCa----GC- -5'
6363 5' -55 NC_001847.1 + 93123 0.67 0.868024
Target:  5'- aGGCGCCGcgccGG-CACGGCGCAGcuUCGu -3'
miRNA:   3'- cCCGUGGU----UCaGUGUCGCGUUccAGC- -5'
6363 5' -55 NC_001847.1 + 34642 0.67 0.868024
Target:  5'- -cGCGCCGAGgccgaGCGGCGCGccgAGGgggCGg -3'
miRNA:   3'- ccCGUGGUUCag---UGUCGCGU---UCCa--GC- -5'
6363 5' -55 NC_001847.1 + 134044 0.67 0.868024
Target:  5'- gGGGCACgCGgcgucuccagAGUCACAG-GCGGGGa-- -3'
miRNA:   3'- -CCCGUG-GU----------UCAGUGUCgCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 77666 0.67 0.868024
Target:  5'- cGGGCGCCGAGgUACugcuggccgAGCGCuucAAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUG---------UCGCG---UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 28139 0.67 0.875452
Target:  5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5'
6363 5' -55 NC_001847.1 + 40597 0.67 0.875452
Target:  5'- cGGcGUACUcg--CGCAGCGUggGGUUGg -3'
miRNA:   3'- -CC-CGUGGuucaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 90161 0.67 0.896375
Target:  5'- cGGGCgcaugGCCAAG-CGCAGCcuuGCGGGGcugcugCGg -3'
miRNA:   3'- -CCCG-----UGGUUCaGUGUCG---CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 97943 0.68 0.85252
Target:  5'- aGGGCGCUc-GUgACAGCgGCGAGGg-- -3'
miRNA:   3'- -CCCGUGGuuCAgUGUCG-CGUUCCagc -5'
6363 5' -55 NC_001847.1 + 101084 0.68 0.836196
Target:  5'- cGGGgGCCGGGUCGgCGGgGC-GGG-CGg -3'
miRNA:   3'- -CCCgUGGUUCAGU-GUCgCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 8110 0.68 0.85252
Target:  5'- cGGCGCCAg--CGCAgGCGCGGGGcCc -3'
miRNA:   3'- cCCGUGGUucaGUGU-CGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 2161 0.68 0.85252
Target:  5'- -aGCACCAGGUCucGCAGCGCccgcgccgccuGGG-CGg -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGu----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 43244 0.68 0.836196
Target:  5'- gGGGCGCgCGGGcggCGCGGCGCccGGGGg-- -3'
miRNA:   3'- -CCCGUG-GUUCa--GUGUCGCG--UUCCagc -5'
6363 5' -55 NC_001847.1 + 59848 0.68 0.844458
Target:  5'- gGGGCACCGgccAGgCGCGGuCGCcgAGGGcCGg -3'
miRNA:   3'- -CCCGUGGU---UCaGUGUC-GCG--UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 68846 0.68 0.847707
Target:  5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3'
miRNA:   3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.