miRNA display CGI


Results 141 - 160 of 248 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 97946 0.68 0.859601
Target:  5'- cGGCACCGGGcgccUCGCaccgggcucucccGGCGCGAGG-Cu -3'
miRNA:   3'- cCCGUGGUUC----AGUG-------------UCGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 123061 0.68 0.860378
Target:  5'- cGGGCGCCGGaccCGCGGCGCuccgcGGccUCGg -3'
miRNA:   3'- -CCCGUGGUUca-GUGUCGCGuu---CC--AGC- -5'
6363 5' -55 NC_001847.1 + 133616 0.68 0.81911
Target:  5'- cGGGCGCCu--UCGCGcGCGcCGAGGcCGc -3'
miRNA:   3'- -CCCGUGGuucAGUGU-CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 6957 0.68 0.844458
Target:  5'- aGGCGCgGGGUCGCGGCgGCGcuuccgcccgcGGGcCGc -3'
miRNA:   3'- cCCGUGgUUCAGUGUCG-CGU-----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 101084 0.68 0.836196
Target:  5'- cGGGgGCCGGGUCGgCGGgGC-GGG-CGg -3'
miRNA:   3'- -CCCgUGGUUCAGU-GUCgCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 126505 0.68 0.851723
Target:  5'- uGGGCGcCCGAGUcCGCAGCggccgcucccccgGCGGGGcUUGc -3'
miRNA:   3'- -CCCGU-GGUUCA-GUGUCG-------------CGUUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 43244 0.68 0.836196
Target:  5'- gGGGCGCgCGGGcggCGCGGCGCccGGGGg-- -3'
miRNA:   3'- -CCCGUG-GUUCa--GUGUCGCG--UUCCagc -5'
6363 5' -55 NC_001847.1 + 19895 0.68 0.836196
Target:  5'- cGGGCGCgAGGUagaAGCGCAcgagGGcGUCGc -3'
miRNA:   3'- -CCCGUGgUUCAgugUCGCGU----UC-CAGC- -5'
6363 5' -55 NC_001847.1 + 68846 0.68 0.847707
Target:  5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3'
miRNA:   3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 15785 0.68 0.860378
Target:  5'- cGGCGgCAAGcgccgCGCGGCGgGAGG-CGg -3'
miRNA:   3'- cCCGUgGUUCa----GUGUCGCgUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 74990 0.68 0.85252
Target:  5'- gGGGCGCCAGGcUCAguccgcCGGCggGCGGGGggccagCGg -3'
miRNA:   3'- -CCCGUGGUUC-AGU------GUCG--CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 59160 0.68 0.860378
Target:  5'- cGGCGCCGcuuGGcCAgGGgGCGGcGGUCGa -3'
miRNA:   3'- cCCGUGGU---UCaGUgUCgCGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 130628 0.68 0.85252
Target:  5'- aGGGCGCCGAGgccgaagaCGCGGagaucgGCGAGGaCGc -3'
miRNA:   3'- -CCCGUGGUUCa-------GUGUCg-----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 70511 0.68 0.860378
Target:  5'- cGGGCAUCAAGcaGCGGCuGCuGGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCagUGUCG-CGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 32373 0.69 0.770641
Target:  5'- gGGGCGCCGGcGUCGCGgGCGUcgcgccuugcguggGGGGUUu -3'
miRNA:   3'- -CCCGUGGUU-CAGUGU-CGCG--------------UUCCAGc -5'
6363 5' -55 NC_001847.1 + 118881 0.69 0.773492
Target:  5'- cGGGCGCUcGGUgCACGGgGcCGGGGcCGg -3'
miRNA:   3'- -CCCGUGGuUCA-GUGUCgC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 91769 0.69 0.773492
Target:  5'- cGGGCGCUccGUCgGCGGCGCu-GGcCGc -3'
miRNA:   3'- -CCCGUGGuuCAG-UGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 69689 0.69 0.792193
Target:  5'- uGGGCGCgGGG-C-CGGCGCucGGUCc -3'
miRNA:   3'- -CCCGUGgUUCaGuGUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 102582 0.69 0.801326
Target:  5'- uGGCguccGCCAGGUCGCccAGCGcCGAGGgcugCGc -3'
miRNA:   3'- cCCG----UGGUUCAGUG--UCGC-GUUCCa---GC- -5'
6363 5' -55 NC_001847.1 + 31764 0.69 0.773492
Target:  5'- cGGCGCCgGAGaCGCGGCGCuGGcGUCc -3'
miRNA:   3'- cCCGUGG-UUCaGUGUCGCGuUC-CAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.