Results 121 - 140 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 105710 | 0.68 | 0.836196 |
Target: 5'- cGGCGCCAcgccccAGcgcUCGCuGGCGCGcAGGUCa -3' miRNA: 3'- cCCGUGGU------UC---AGUG-UCGCGU-UCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 571 | 0.68 | 0.81911 |
Target: 5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3' miRNA: 3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 30803 | 0.68 | 0.81911 |
Target: 5'- cGGGCGCCu--UCGCGcGCGcCGAGGcCGc -3' miRNA: 3'- -CCCGUGGuucAGUGU-CGC-GUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 104191 | 0.68 | 0.81911 |
Target: 5'- gGGGCACCGcGcgCGCAGCGCcguuuaugcgAAGGcCu -3' miRNA: 3'- -CCCGUGGUuCa-GUGUCGCG----------UUCCaGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 30977 | 0.68 | 0.822585 |
Target: 5'- cGGGCGCaaggacauggccgcgCAGGgCGCGGCGCuGGGGcUCGg -3' miRNA: 3'- -CCCGUG---------------GUUCaGUGUCGCG-UUCC-AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 43303 | 0.68 | 0.827745 |
Target: 5'- -cGCACCAGGagGC-GUGCA-GGUCGg -3' miRNA: 3'- ccCGUGGUUCagUGuCGCGUuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 56385 | 0.68 | 0.827745 |
Target: 5'- cGGCGCuCGGGUCGgggaggucggcCGGCGCGGGGa-- -3' miRNA: 3'- cCCGUG-GUUCAGU-----------GUCGCGUUCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 57992 | 0.68 | 0.85252 |
Target: 5'- cGGCGC--GGUgGCGGCGCAGgcggcggcGGUCGc -3' miRNA: 3'- cCCGUGguUCAgUGUCGCGUU--------CCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 97946 | 0.68 | 0.859601 |
Target: 5'- cGGCACCGGGcgccUCGCaccgggcucucccGGCGCGAGG-Cu -3' miRNA: 3'- cCCGUGGUUC----AGUG-------------UCGCGUUCCaGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 60739 | 0.68 | 0.860378 |
Target: 5'- cGGGCG-CGGG-CGCGGCGCGGuGG-CGg -3' miRNA: 3'- -CCCGUgGUUCaGUGUCGCGUU-CCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 24929 | 0.68 | 0.844458 |
Target: 5'- cGGC-CCGcacGUCGCAGUGCcAGGcUCGa -3' miRNA: 3'- cCCGuGGUu--CAGUGUCGCGuUCC-AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 61246 | 0.68 | 0.836196 |
Target: 5'- cGGGCuggGCCA--UCGCuGCGCGGGG-CGc -3' miRNA: 3'- -CCCG---UGGUucAGUGuCGCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 101084 | 0.68 | 0.836196 |
Target: 5'- cGGGgGCCGGGUCGgCGGgGC-GGG-CGg -3' miRNA: 3'- -CCCgUGGUUCAGU-GUCgCGuUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 6957 | 0.68 | 0.844458 |
Target: 5'- aGGCGCgGGGUCGCGGCgGCGcuuccgcccgcGGGcCGc -3' miRNA: 3'- cCCGUGgUUCAGUGUCG-CGU-----------UCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 123061 | 0.68 | 0.860378 |
Target: 5'- cGGGCGCCGGaccCGCGGCGCuccgcGGccUCGg -3' miRNA: 3'- -CCCGUGGUUca-GUGUCGCGuu---CC--AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 93123 | 0.67 | 0.868024 |
Target: 5'- aGGCGCCGcgccGG-CACGGCGCAGcuUCGu -3' miRNA: 3'- cCCGUGGU----UCaGUGUCGCGUUccAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 134044 | 0.67 | 0.868024 |
Target: 5'- gGGGCACgCGgcgucuccagAGUCACAG-GCGGGGa-- -3' miRNA: 3'- -CCCGUG-GU----------UCAGUGUCgCGUUCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 40597 | 0.67 | 0.875452 |
Target: 5'- cGGcGUACUcg--CGCAGCGUggGGUUGg -3' miRNA: 3'- -CC-CGUGGuucaGUGUCGCGuuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 90477 | 0.67 | 0.875452 |
Target: 5'- cGGCucGCC-GGUCACGGUGCA-GG-CGg -3' miRNA: 3'- cCCG--UGGuUCAGUGUCGCGUuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 28139 | 0.67 | 0.875452 |
Target: 5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3' miRNA: 3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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