miRNA display CGI


Results 121 - 140 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 97943 0.68 0.85252
Target:  5'- aGGGCGCUc-GUgACAGCgGCGAGGg-- -3'
miRNA:   3'- -CCCGUGGuuCAgUGUCG-CGUUCCagc -5'
6363 5' -55 NC_001847.1 + 57992 0.68 0.85252
Target:  5'- cGGCGC--GGUgGCGGCGCAGgcggcggcGGUCGc -3'
miRNA:   3'- cCCGUGguUCAgUGUCGCGUU--------CCAGC- -5'
6363 5' -55 NC_001847.1 + 10626 0.68 0.85252
Target:  5'- uGGGCGCCAuGUaccuaGCGGUGCcuGGGgacgCGg -3'
miRNA:   3'- -CCCGUGGUuCAg----UGUCGCGu-UCCa---GC- -5'
6363 5' -55 NC_001847.1 + 27815 0.68 0.85252
Target:  5'- aGGGCGCCGAGgccgaagaCGCGGagaucgGCGAGGaCGc -3'
miRNA:   3'- -CCCGUGGUUCa-------GUGUCg-----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 82078 0.68 0.85252
Target:  5'- cGGGCucggcgucuggGCCAAG-CGCGGgGCcAGGcUCGg -3'
miRNA:   3'- -CCCG-----------UGGUUCaGUGUCgCGuUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 130628 0.68 0.85252
Target:  5'- aGGGCGCCGAGgccgaagaCGCGGagaucgGCGAGGaCGc -3'
miRNA:   3'- -CCCGUGGUUCa-------GUGUCg-----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 2161 0.68 0.85252
Target:  5'- -aGCACCAGGUCucGCAGCGCccgcgccgccuGGG-CGg -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGu----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 97946 0.68 0.859601
Target:  5'- cGGCACCGGGcgccUCGCaccgggcucucccGGCGCGAGG-Cu -3'
miRNA:   3'- cCCGUGGUUC----AGUG-------------UCGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 70511 0.68 0.860378
Target:  5'- cGGGCAUCAAGcaGCGGCuGCuGGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCagUGUCG-CGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 15785 0.68 0.860378
Target:  5'- cGGCGgCAAGcgccgCGCGGCGgGAGG-CGg -3'
miRNA:   3'- cCCGUgGUUCa----GUGUCGCgUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 101170 0.68 0.860378
Target:  5'- gGGGC-CgGGGUCGgGGCGC--GGUCu -3'
miRNA:   3'- -CCCGuGgUUCAGUgUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 59160 0.68 0.860378
Target:  5'- cGGCGCCGcuuGGcCAgGGgGCGGcGGUCGa -3'
miRNA:   3'- cCCGUGGU---UCaGUgUCgCGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 116114 0.68 0.860378
Target:  5'- cGGGCcuGCCGgcggGGUCAC-GCGCGaagAGGcCGa -3'
miRNA:   3'- -CCCG--UGGU----UCAGUGuCGCGU---UCCaGC- -5'
6363 5' -55 NC_001847.1 + 123061 0.68 0.860378
Target:  5'- cGGGCGCCGGaccCGCGGCGCuccgcGGccUCGg -3'
miRNA:   3'- -CCCGUGGUUca-GUGUCGCGuu---CC--AGC- -5'
6363 5' -55 NC_001847.1 + 60739 0.68 0.860378
Target:  5'- cGGGCG-CGGG-CGCGGCGCGGuGG-CGg -3'
miRNA:   3'- -CCCGUgGUUCaGUGUCGCGUU-CCaGC- -5'
6363 5' -55 NC_001847.1 + 34642 0.67 0.868024
Target:  5'- -cGCGCCGAGgccgaGCGGCGCGccgAGGgggCGg -3'
miRNA:   3'- ccCGUGGUUCag---UGUCGCGU---UCCa--GC- -5'
6363 5' -55 NC_001847.1 + 134044 0.67 0.868024
Target:  5'- gGGGCACgCGgcgucuccagAGUCACAG-GCGGGGa-- -3'
miRNA:   3'- -CCCGUG-GU----------UCAGUGUCgCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 93123 0.67 0.868024
Target:  5'- aGGCGCCGcgccGG-CACGGCGCAGcuUCGu -3'
miRNA:   3'- cCCGUGGU----UCaGUGUCGCGUUccAGC- -5'
6363 5' -55 NC_001847.1 + 58898 0.67 0.868024
Target:  5'- aGGuGCGCCuc--CAUGGCGUcGGGUCGg -3'
miRNA:   3'- -CC-CGUGGuucaGUGUCGCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 61996 0.67 0.868024
Target:  5'- uGGGC-CCGAagaGCGGCGCGGGGcccugCGg -3'
miRNA:   3'- -CCCGuGGUUcagUGUCGCGUUCCa----GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.