Results 141 - 160 of 248 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 77666 | 0.67 | 0.868024 |
Target: 5'- cGGGCGCCGAGgUACugcuggccgAGCGCuucAAGG-CGg -3' miRNA: 3'- -CCCGUGGUUCaGUG---------UCGCG---UUCCaGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 19630 | 0.67 | 0.868024 |
Target: 5'- gGGGCGCCGGcGUC--GGCGCGcGGcCGc -3' miRNA: 3'- -CCCGUGGUU-CAGugUCGCGUuCCaGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 72908 | 0.67 | 0.868024 |
Target: 5'- uGGcGCGCCAcgaggcGGUCgGCGGCGUcGGGUUu -3' miRNA: 3'- -CC-CGUGGU------UCAG-UGUCGCGuUCCAGc -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 34642 | 0.67 | 0.868024 |
Target: 5'- -cGCGCCGAGgccgaGCGGCGCGccgAGGgggCGg -3' miRNA: 3'- ccCGUGGUUCag---UGUCGCGU---UCCa--GC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 58639 | 0.67 | 0.874719 |
Target: 5'- uGGGCcacgaagauuuccGCCGGGUCGCAcGCuuGCGGcGGUUGg -3' miRNA: 3'- -CCCG-------------UGGUUCAGUGU-CG--CGUU-CCAGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 130952 | 0.67 | 0.875452 |
Target: 5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3' miRNA: 3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 116065 | 0.67 | 0.875452 |
Target: 5'- cGGGCACCGGGgcgCACuuuCGCAcGG-CGc -3' miRNA: 3'- -CCCGUGGUUCa--GUGuc-GCGUuCCaGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 63103 | 0.67 | 0.875452 |
Target: 5'- cGGGUAcgccCCGGGgccgcCGCcGCGCAcGGGUCGg -3' miRNA: 3'- -CCCGU----GGUUCa----GUGuCGCGU-UCCAGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 129339 | 0.67 | 0.875452 |
Target: 5'- cGGcGCGCCAAGcgcaagCGCGGUGCcGGGccCGg -3' miRNA: 3'- -CC-CGUGGUUCa-----GUGUCGCGuUCCa-GC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 28139 | 0.67 | 0.875452 |
Target: 5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3' miRNA: 3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 90477 | 0.67 | 0.875452 |
Target: 5'- cGGCucGCC-GGUCACGGUGCA-GG-CGg -3' miRNA: 3'- cCCG--UGGuUCAGUGUCGCGUuCCaGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 125080 | 0.67 | 0.875452 |
Target: 5'- gGGGCGCUggGcccgCGCGGC-CAAGauGUCGu -3' miRNA: 3'- -CCCGUGGuuCa---GUGUCGcGUUC--CAGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 40597 | 0.67 | 0.875452 |
Target: 5'- cGGcGUACUcg--CGCAGCGUggGGUUGg -3' miRNA: 3'- -CC-CGUGGuucaGUGUCGCGuuCCAGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 11184 | 0.67 | 0.875452 |
Target: 5'- gGGGCuGCCGcuGGUCcgcGCGGgGCu-GGUCGa -3' miRNA: 3'- -CCCG-UGGU--UCAG---UGUCgCGuuCCAGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 100837 | 0.67 | 0.881946 |
Target: 5'- cGGGCggcuccgGCCAGGgcCGgAGCGCcggcccgccgGGGGUCGg -3' miRNA: 3'- -CCCG-------UGGUUCa-GUgUCGCG----------UUCCAGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 22614 | 0.67 | 0.882656 |
Target: 5'- uGGCAagCGAGUgGCcGCGCAGGGcgCGu -3' miRNA: 3'- cCCGUg-GUUCAgUGuCGCGUUCCa-GC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 100758 | 0.67 | 0.882656 |
Target: 5'- cGGGguCCAGGUCGCcccGCGCcauGG-CGc -3' miRNA: 3'- -CCCguGGUUCAGUGu--CGCGuu-CCaGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 4608 | 0.67 | 0.882656 |
Target: 5'- aGGCgGCCAcgucGUCGCAGCGCucuGGGa-- -3' miRNA: 3'- cCCG-UGGUu---CAGUGUCGCGu--UCCagc -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 12571 | 0.67 | 0.882656 |
Target: 5'- cGGGCGCCGcGUaCGCGGCGCcc--UCGc -3' miRNA: 3'- -CCCGUGGUuCA-GUGUCGCGuuccAGC- -5' |
|||||||
6363 | 5' | -55 | NC_001847.1 | + | 16577 | 0.67 | 0.882656 |
Target: 5'- cGGGacaGCgGGGUCgggGCGGCGUggGGUg- -3' miRNA: 3'- -CCCg--UGgUUCAG---UGUCGCGuuCCAgc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home