miRNA display CGI


Results 121 - 140 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 97946 0.68 0.859601
Target:  5'- cGGCACCGGGcgccUCGCaccgggcucucccGGCGCGAGG-Cu -3'
miRNA:   3'- cCCGUGGUUC----AGUG-------------UCGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 97943 0.68 0.85252
Target:  5'- aGGGCGCUc-GUgACAGCgGCGAGGg-- -3'
miRNA:   3'- -CCCGUGGuuCAgUGUCG-CGUUCCagc -5'
6363 5' -55 NC_001847.1 + 130628 0.68 0.85252
Target:  5'- aGGGCGCCGAGgccgaagaCGCGGagaucgGCGAGGaCGc -3'
miRNA:   3'- -CCCGUGGUUCa-------GUGUCg-----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 74990 0.68 0.85252
Target:  5'- gGGGCGCCAGGcUCAguccgcCGGCggGCGGGGggccagCGg -3'
miRNA:   3'- -CCCGUGGUUC-AGU------GUCG--CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 10626 0.68 0.85252
Target:  5'- uGGGCGCCAuGUaccuaGCGGUGCcuGGGgacgCGg -3'
miRNA:   3'- -CCCGUGGUuCAg----UGUCGCGu-UCCa---GC- -5'
6363 5' -55 NC_001847.1 + 27815 0.68 0.85252
Target:  5'- aGGGCGCCGAGgccgaagaCGCGGagaucgGCGAGGaCGc -3'
miRNA:   3'- -CCCGUGGUUCa-------GUGUCg-----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 57992 0.68 0.85252
Target:  5'- cGGCGC--GGUgGCGGCGCAGgcggcggcGGUCGc -3'
miRNA:   3'- cCCGUGguUCAgUGUCGCGUU--------CCAGC- -5'
6363 5' -55 NC_001847.1 + 82078 0.68 0.85252
Target:  5'- cGGGCucggcgucuggGCCAAG-CGCGGgGCcAGGcUCGg -3'
miRNA:   3'- -CCCG-----------UGGUUCaGUGUCgCGuUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 8110 0.68 0.85252
Target:  5'- cGGCGCCAg--CGCAgGCGCGGGGcCc -3'
miRNA:   3'- cCCGUGGUucaGUGU-CGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 2161 0.68 0.85252
Target:  5'- -aGCACCAGGUCucGCAGCGCccgcgccgccuGGG-CGg -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGu----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 126505 0.68 0.851723
Target:  5'- uGGGCGcCCGAGUcCGCAGCggccgcucccccgGCGGGGcUUGc -3'
miRNA:   3'- -CCCGU-GGUUCA-GUGUCG-------------CGUUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 68846 0.68 0.847707
Target:  5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3'
miRNA:   3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 59848 0.68 0.844458
Target:  5'- gGGGCACCGgccAGgCGCGGuCGCcgAGGGcCGg -3'
miRNA:   3'- -CCCGUGGU---UCaGUGUC-GCG--UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 6957 0.68 0.844458
Target:  5'- aGGCGCgGGGUCGCGGCgGCGcuuccgcccgcGGGcCGc -3'
miRNA:   3'- cCCGUGgUUCAGUGUCG-CGU-----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 24929 0.68 0.844458
Target:  5'- cGGC-CCGcacGUCGCAGUGCcAGGcUCGa -3'
miRNA:   3'- cCCGuGGUu--CAGUGUCGCGuUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 33534 0.68 0.836196
Target:  5'- aGGCGCCGGG-CGCGgGCGCcgaaGAGG-CGg -3'
miRNA:   3'- cCCGUGGUUCaGUGU-CGCG----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 16835 0.68 0.836196
Target:  5'- cGGGUAgCC-AGUgGCGGUGCAGGuguaGUCGa -3'
miRNA:   3'- -CCCGU-GGuUCAgUGUCGCGUUC----CAGC- -5'
6363 5' -55 NC_001847.1 + 101084 0.68 0.836196
Target:  5'- cGGGgGCCGGGUCGgCGGgGC-GGG-CGg -3'
miRNA:   3'- -CCCgUGGUUCAGU-GUCgCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 105710 0.68 0.836196
Target:  5'- cGGCGCCAcgccccAGcgcUCGCuGGCGCGcAGGUCa -3'
miRNA:   3'- cCCGUGGU------UC---AGUG-UCGCGU-UCCAGc -5'
6363 5' -55 NC_001847.1 + 61246 0.68 0.836196
Target:  5'- cGGGCuggGCCA--UCGCuGCGCGGGG-CGc -3'
miRNA:   3'- -CCCG---UGGUucAGUGuCGCGUUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.