miRNA display CGI


Results 121 - 140 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 61246 0.68 0.836196
Target:  5'- cGGGCuggGCCA--UCGCuGCGCGGGG-CGc -3'
miRNA:   3'- -CCCG---UGGUucAGUGuCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 61791 0.71 0.694265
Target:  5'- cGGGUggGCCGGGUCGCccuGGC-CAuGGUCGa -3'
miRNA:   3'- -CCCG--UGGUUCAGUG---UCGcGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 61875 0.66 0.902882
Target:  5'- cGGCGCCcgcgGGGguugCACGGCgagcggaaguacGCGAGGUCc -3'
miRNA:   3'- cCCGUGG----UUCa---GUGUCG------------CGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 61996 0.67 0.868024
Target:  5'- uGGGC-CCGAagaGCGGCGCGGGGcccugCGg -3'
miRNA:   3'- -CCCGuGGUUcagUGUCGCGUUCCa----GC- -5'
6363 5' -55 NC_001847.1 + 62620 0.66 0.923196
Target:  5'- cGGGCGCCGGguagaagaaggccccGUCcaGCAGCGUuucGUCGu -3'
miRNA:   3'- -CCCGUGGUU---------------CAG--UGUCGCGuucCAGC- -5'
6363 5' -55 NC_001847.1 + 62775 0.66 0.915173
Target:  5'- aGGacCACCGGGUCugGGCcCGGGGgggCGa -3'
miRNA:   3'- cCC--GUGGUUCAGugUCGcGUUCCa--GC- -5'
6363 5' -55 NC_001847.1 + 63103 0.67 0.875452
Target:  5'- cGGGUAcgccCCGGGgccgcCGCcGCGCAcGGGUCGg -3'
miRNA:   3'- -CCCGU----GGUUCa----GUGuCGCGU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 63146 0.66 0.909148
Target:  5'- uGGCACCGGaUCcCGGCGCGcAGG-CGc -3'
miRNA:   3'- cCCGUGGUUcAGuGUCGCGU-UCCaGC- -5'
6363 5' -55 NC_001847.1 + 63302 0.74 0.490414
Target:  5'- -aGCACCGGGUCcaGCAGCGCGuGGUUc -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGUuCCAGc -5'
6363 5' -55 NC_001847.1 + 64683 0.75 0.47122
Target:  5'- cGGGCGCCcgcgcguGUCGCAGUGCGucAGGcgCGg -3'
miRNA:   3'- -CCCGUGGuu-----CAGUGUCGCGU--UCCa-GC- -5'
6363 5' -55 NC_001847.1 + 65495 0.75 0.48077
Target:  5'- -cGUACCGGGUCGCGGCGCGgcuGGGacUCGc -3'
miRNA:   3'- ccCGUGGUUCAGUGUCGCGU---UCC--AGC- -5'
6363 5' -55 NC_001847.1 + 66467 0.67 0.895712
Target:  5'- cGGGCACgGuagucucAGUCGCc-CGCAGGGgCGg -3'
miRNA:   3'- -CCCGUGgU-------UCAGUGucGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 67187 0.68 0.825173
Target:  5'- aGGGCGCgCAGGUagcacaCGCcgugccgagcggcgGGCGCGcGGUCGa -3'
miRNA:   3'- -CCCGUG-GUUCA------GUG--------------UCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 68215 0.66 0.902882
Target:  5'- gGGGCGCaCGGGcCGCGGCG--GGGcCGc -3'
miRNA:   3'- -CCCGUG-GUUCaGUGUCGCguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 68835 0.7 0.763943
Target:  5'- aGGGCGCCGcgaagAGcUCG-GGCGCGAGG-CGg -3'
miRNA:   3'- -CCCGUGGU-----UC-AGUgUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 68846 0.68 0.847707
Target:  5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3'
miRNA:   3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 69689 0.69 0.792193
Target:  5'- uGGGCGCgGGG-C-CGGCGCucGGUCc -3'
miRNA:   3'- -CCCGUGgUUCaGuGUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 70286 0.69 0.792193
Target:  5'- -cGCGCCuggcgGGGUCGCGGCGCGccgcgcuGGUCu -3'
miRNA:   3'- ccCGUGG-----UUCAGUGUCGCGUu------CCAGc -5'
6363 5' -55 NC_001847.1 + 70322 0.71 0.694265
Target:  5'- cGGCACCAGGUCGUAGUcuaCGAGGUgGc -3'
miRNA:   3'- cCCGUGGUUCAGUGUCGc--GUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 70511 0.68 0.860378
Target:  5'- cGGGCAUCAAGcaGCGGCuGCuGGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCagUGUCG-CGuUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.