Results 141 - 160 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 72908 | 0.67 | 0.868024 |
Target: 5'- uGGcGCGCCAcgaggcGGUCgGCGGCGUcGGGUUu -3' miRNA: 3'- -CC-CGUGGU------UCAG-UGUCGCGuUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 74990 | 0.68 | 0.85252 |
Target: 5'- gGGGCGCCAGGcUCAguccgcCGGCggGCGGGGggccagCGg -3' miRNA: 3'- -CCCGUGGUUC-AGU------GUCG--CGUUCCa-----GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 75383 | 0.65 | 0.931777 |
Target: 5'- uGGGaCACCGucucgcGUCGCcGcCGCGAGG-CGg -3' miRNA: 3'- -CCC-GUGGUu-----CAGUGuC-GCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 76400 | 0.69 | 0.773492 |
Target: 5'- gGGGCGCCGGGggcCGCGGCG-GGGG-Ca -3' miRNA: 3'- -CCCGUGGUUCa--GUGUCGCgUUCCaGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 77666 | 0.67 | 0.868024 |
Target: 5'- cGGGCGCCGAGgUACugcuggccgAGCGCuucAAGG-CGg -3' miRNA: 3'- -CCCGUGGUUCaGUG---------UCGCG---UUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 78373 | 0.66 | 0.920953 |
Target: 5'- cGGGCgGgCAA-UCGCGGCGCAuGGcCGa -3' miRNA: 3'- -CCCG-UgGUUcAGUGUCGCGUuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 79571 | 0.74 | 0.490414 |
Target: 5'- gGGGCGCCGGGcUCGCGGCcucuucggGCGGGGgCGc -3' miRNA: 3'- -CCCGUGGUUC-AGUGUCG--------CGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 80238 | 0.66 | 0.926487 |
Target: 5'- cGGGCcacguuGCCGGGUCgACGGCgugccgcaGCAGGGcCu -3' miRNA: 3'- -CCCG------UGGUUCAG-UGUCG--------CGUUCCaGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 81569 | 0.66 | 0.926487 |
Target: 5'- aGGCAuCCAcGUCGCccagcgcggcgAGCGCGGcGUCGg -3' miRNA: 3'- cCCGU-GGUuCAGUG-----------UCGCGUUcCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 81946 | 0.7 | 0.724637 |
Target: 5'- cGGCGuCgAGGUgGCGGCGCGccacagccGGGUCGc -3' miRNA: 3'- cCCGU-GgUUCAgUGUCGCGU--------UCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 82078 | 0.68 | 0.85252 |
Target: 5'- cGGGCucggcgucuggGCCAAG-CGCGGgGCcAGGcUCGg -3' miRNA: 3'- -CCCG-----------UGGUUCaGUGUCgCGuUCC-AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 82885 | 0.71 | 0.663412 |
Target: 5'- cGGGCgcgccgcaGCCAAGcCGCGGCGCGcGG-CGc -3' miRNA: 3'- -CCCG--------UGGUUCaGUGUCGCGUuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 82885 | 0.66 | 0.926487 |
Target: 5'- cGGGCACgCGAGcacgaaGCGGCGCGucuuGUCa -3' miRNA: 3'- -CCCGUG-GUUCag----UGUCGCGUuc--CAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 83174 | 0.7 | 0.754273 |
Target: 5'- cGGcGCACCcAGugcaUCACuGcCGCGGGGUCGc -3' miRNA: 3'- -CC-CGUGGuUC----AGUGuC-GCGUUCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 84548 | 0.74 | 0.500147 |
Target: 5'- aGGCGCCcgcGUCGCAGCGCuccAGGUa- -3' miRNA: 3'- cCCGUGGuu-CAGUGUCGCGu--UCCAgc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 84696 | 0.7 | 0.763943 |
Target: 5'- cGGCuuGCCGuccuuGUCGCAGCGC-GGGUUc -3' miRNA: 3'- cCCG--UGGUu----CAGUGUCGCGuUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 85249 | 0.7 | 0.714582 |
Target: 5'- cGGCGCCAGGU----GCGCGAGGUa- -3' miRNA: 3'- cCCGUGGUUCAguguCGCGUUCCAgc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 86054 | 0.66 | 0.926487 |
Target: 5'- aGGCGCUggGggcCACGGaUGCGAGcGUCc -3' miRNA: 3'- cCCGUGGuuCa--GUGUC-GCGUUC-CAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 88002 | 0.67 | 0.889632 |
Target: 5'- cGGGC-CCGAGgggCGCGGCGuCAucGG-CGa -3' miRNA: 3'- -CCCGuGGUUCa--GUGUCGC-GUu-CCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 88236 | 0.71 | 0.694265 |
Target: 5'- cGGaGCCGAGgccggCGCGGCGCGGGG-CGc -3' miRNA: 3'- cCCgUGGUUCa----GUGUCGCGUUCCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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