Results 121 - 140 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 63146 | 0.66 | 0.909148 |
Target: 5'- uGGCACCGGaUCcCGGCGCGcAGG-CGc -3' miRNA: 3'- cCCGUGGUUcAGuGUCGCGU-UCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 63103 | 0.67 | 0.875452 |
Target: 5'- cGGGUAcgccCCGGGgccgcCGCcGCGCAcGGGUCGg -3' miRNA: 3'- -CCCGU----GGUUCa----GUGuCGCGU-UCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 62775 | 0.66 | 0.915173 |
Target: 5'- aGGacCACCGGGUCugGGCcCGGGGgggCGa -3' miRNA: 3'- cCC--GUGGUUCAGugUCGcGUUCCa--GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 62620 | 0.66 | 0.923196 |
Target: 5'- cGGGCGCCGGguagaagaaggccccGUCcaGCAGCGUuucGUCGu -3' miRNA: 3'- -CCCGUGGUU---------------CAG--UGUCGCGuucCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 61996 | 0.67 | 0.868024 |
Target: 5'- uGGGC-CCGAagaGCGGCGCGGGGcccugCGg -3' miRNA: 3'- -CCCGuGGUUcagUGUCGCGUUCCa----GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 61875 | 0.66 | 0.902882 |
Target: 5'- cGGCGCCcgcgGGGguugCACGGCgagcggaaguacGCGAGGUCc -3' miRNA: 3'- cCCGUGG----UUCa---GUGUCG------------CGUUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 61791 | 0.71 | 0.694265 |
Target: 5'- cGGGUggGCCGGGUCGCccuGGC-CAuGGUCGa -3' miRNA: 3'- -CCCG--UGGUUCAGUG---UCGcGUuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 61246 | 0.68 | 0.836196 |
Target: 5'- cGGGCuggGCCA--UCGCuGCGCGGGG-CGc -3' miRNA: 3'- -CCCG---UGGUucAGUGuCGCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 61185 | 0.72 | 0.611584 |
Target: 5'- aGGGCgGCUAGGUCGCcGUGagaGAGGUCu -3' miRNA: 3'- -CCCG-UGGUUCAGUGuCGCg--UUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 60857 | 0.77 | 0.365067 |
Target: 5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3' miRNA: 3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 60739 | 0.68 | 0.860378 |
Target: 5'- cGGGCG-CGGG-CGCGGCGCGGuGG-CGg -3' miRNA: 3'- -CCCGUgGUUCaGUGUCGCGUU-CCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 60255 | 0.69 | 0.810301 |
Target: 5'- cGGCGCCGAcuUCGCAgGCGCuugcguGGUCa -3' miRNA: 3'- cCCGUGGUUc-AGUGU-CGCGuu----CCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 59940 | 0.67 | 0.868024 |
Target: 5'- aGGGCGCCAcgcaagcGUC-CGGCGUGGcGUCGu -3' miRNA: 3'- -CCCGUGGUu------CAGuGUCGCGUUcCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 59848 | 0.68 | 0.844458 |
Target: 5'- gGGGCACCGgccAGgCGCGGuCGCcgAGGGcCGg -3' miRNA: 3'- -CCCGUGGU---UCaGUGUC-GCG--UUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 59309 | 0.73 | 0.590907 |
Target: 5'- aGGGUGCCAGGgCGCGGCGCc-GG-CGg -3' miRNA: 3'- -CCCGUGGUUCaGUGUCGCGuuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 59160 | 0.68 | 0.860378 |
Target: 5'- cGGCGCCGcuuGGcCAgGGgGCGGcGGUCGa -3' miRNA: 3'- cCCGUGGU---UCaGUgUCgCGUU-CCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 58898 | 0.67 | 0.868024 |
Target: 5'- aGGuGCGCCuc--CAUGGCGUcGGGUCGg -3' miRNA: 3'- -CC-CGUGGuucaGUGUCGCGuUCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 58818 | 0.7 | 0.763943 |
Target: 5'- cGGCGCCuGGgC-CGGUGCGAgGGUCGg -3' miRNA: 3'- cCCGUGGuUCaGuGUCGCGUU-CCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 58639 | 0.67 | 0.874719 |
Target: 5'- uGGGCcacgaagauuuccGCCGGGUCGCAcGCuuGCGGcGGUUGg -3' miRNA: 3'- -CCCG-------------UGGUUCAGUGU-CG--CGUU-CCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 57992 | 0.68 | 0.85252 |
Target: 5'- cGGCGC--GGUgGCGGCGCAGgcggcggcGGUCGc -3' miRNA: 3'- cCCGUGguUCAgUGUCGCGUU--------CCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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