miRNA display CGI


Results 121 - 140 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 125080 0.67 0.875452
Target:  5'- gGGGCGCUggGcccgCGCGGC-CAAGauGUCGu -3'
miRNA:   3'- -CCCGUGGuuCa---GUGUCGcGUUC--CAGC- -5'
6363 5' -55 NC_001847.1 + 90477 0.67 0.875452
Target:  5'- cGGCucGCC-GGUCACGGUGCA-GG-CGg -3'
miRNA:   3'- cCCG--UGGuUCAGUGUCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 40597 0.67 0.875452
Target:  5'- cGGcGUACUcg--CGCAGCGUggGGUUGg -3'
miRNA:   3'- -CC-CGUGGuucaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 129339 0.67 0.875452
Target:  5'- cGGcGCGCCAAGcgcaagCGCGGUGCcGGGccCGg -3'
miRNA:   3'- -CC-CGUGGUUCa-----GUGUCGCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 79571 0.74 0.490414
Target:  5'- gGGGCGCCGGGcUCGCGGCcucuucggGCGGGGgCGc -3'
miRNA:   3'- -CCCGUGGUUC-AGUGUCG--------CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 52844 0.66 0.920953
Target:  5'- cGGGCGCC-GGUUAacacCAGCuccaGCAAGG-CGu -3'
miRNA:   3'- -CCCGUGGuUCAGU----GUCG----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 47532 0.66 0.914581
Target:  5'- cGGGCGCCAAagccgccGUCucaACGGCGCc-GGccUCGg -3'
miRNA:   3'- -CCCGUGGUU-------CAG---UGUCGCGuuCC--AGC- -5'
6363 5' -55 NC_001847.1 + 22369 0.66 0.915173
Target:  5'- gGGGCGCC-AGUCcuCGGgGCAgaAGG-CGc -3'
miRNA:   3'- -CCCGUGGuUCAGu-GUCgCGU--UCCaGC- -5'
6363 5' -55 NC_001847.1 + 93123 0.67 0.868024
Target:  5'- aGGCGCCGcgccGG-CACGGCGCAGcuUCGu -3'
miRNA:   3'- cCCGUGGU----UCaGUGUCGCGUUccAGC- -5'
6363 5' -55 NC_001847.1 + 70322 0.71 0.694265
Target:  5'- cGGCACCAGGUCGUAGUcuaCGAGGUgGc -3'
miRNA:   3'- cCCGUGGUUCAGUGUCGc--GUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 3978 0.71 0.673734
Target:  5'- aGGGCGCCGGGggccgggcgCGCGGCcccGCGGGG-CGc -3'
miRNA:   3'- -CCCGUGGUUCa--------GUGUCG---CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 91711 0.71 0.663412
Target:  5'- cGGGUcgcgacgccgGCCAGcagcaGCAGCGCGAGGUCc -3'
miRNA:   3'- -CCCG----------UGGUUcag--UGUCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 57955 0.72 0.642698
Target:  5'- cGGGCAgCAgcgcGGUCGCGGCGUcGGGagGc -3'
miRNA:   3'- -CCCGUgGU----UCAGUGUCGCGuUCCagC- -5'
6363 5' -55 NC_001847.1 + 116135 0.72 0.642698
Target:  5'- cGGGCGCUggGgcgCGCGGCcCGAGG-CGc -3'
miRNA:   3'- -CCCGUGGuuCa--GUGUCGcGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 100010 0.72 0.632324
Target:  5'- uGGCgaGCCGAGgCACGGcCGCcAGGUCGc -3'
miRNA:   3'- cCCG--UGGUUCaGUGUC-GCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 14990 0.72 0.62195
Target:  5'- aGGCACCGcaUCGCgAGCGCGccggaggacaAGGUCGc -3'
miRNA:   3'- cCCGUGGUucAGUG-UCGCGU----------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 61185 0.72 0.611584
Target:  5'- aGGGCgGCUAGGUCGCcGUGagaGAGGUCu -3'
miRNA:   3'- -CCCG-UGGUUCAGUGuCGCg--UUCCAGc -5'
6363 5' -55 NC_001847.1 + 37325 0.72 0.601234
Target:  5'- -cGCGCCGAG-CACAGCGCuggcgugcGGUCa -3'
miRNA:   3'- ccCGUGGUUCaGUGUCGCGuu------CCAGc -5'
6363 5' -55 NC_001847.1 + 14446 0.73 0.590907
Target:  5'- cGGCGCCGGGgugCGCGGCcGCGgccucuGGGUCu -3'
miRNA:   3'- cCCGUGGUUCa--GUGUCG-CGU------UCCAGc -5'
6363 5' -55 NC_001847.1 + 123681 0.73 0.590907
Target:  5'- gGGGCucGCCAcgcgcacgguAGcCGCuGGCGCGGGGUCGc -3'
miRNA:   3'- -CCCG--UGGU----------UCaGUG-UCGCGUUCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.