miRNA display CGI


Results 141 - 160 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 48631 0.71 0.704455
Target:  5'- cGGGCGCCcAGcCGCcGCGCGAcGGUg- -3'
miRNA:   3'- -CCCGUGGuUCaGUGuCGCGUU-CCAgc -5'
6363 5' -55 NC_001847.1 + 33018 0.7 0.719619
Target:  5'- gGGGCGCgCGGGgcgaggcgcggaCGCGGCGCAggaguuuauugaccGGGUCGc -3'
miRNA:   3'- -CCCGUG-GUUCa-----------GUGUCGCGU--------------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 49592 0.7 0.724637
Target:  5'- cGGCGCCuGGgCGCAGCGgGAGcUCGg -3'
miRNA:   3'- cCCGUGGuUCaGUGUCGCgUUCcAGC- -5'
6363 5' -55 NC_001847.1 + 81946 0.7 0.724637
Target:  5'- cGGCGuCgAGGUgGCGGCGCGccacagccGGGUCGc -3'
miRNA:   3'- cCCGU-GgUUCAgUGUCGCGU--------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 49508 0.7 0.73461
Target:  5'- cGGCGCCGcuUCGCcgGGCGCGGGGcUCc -3'
miRNA:   3'- cCCGUGGUucAGUG--UCGCGUUCC-AGc -5'
6363 5' -55 NC_001847.1 + 16841 0.7 0.744492
Target:  5'- cGGGCAUCGGG--GCGGCGCucGAGG-CGa -3'
miRNA:   3'- -CCCGUGGUUCagUGUCGCG--UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 116135 0.72 0.642698
Target:  5'- cGGGCGCUggGgcgCGCGGCcCGAGG-CGc -3'
miRNA:   3'- -CCCGUGGuuCa--GUGUCGcGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 100010 0.72 0.632324
Target:  5'- uGGCgaGCCGAGgCACGGcCGCcAGGUCGc -3'
miRNA:   3'- cCCG--UGGUUCaGUGUC-GCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 22369 0.66 0.915173
Target:  5'- gGGGCGCC-AGUCcuCGGgGCAgaAGG-CGc -3'
miRNA:   3'- -CCCGUGGuUCAGu-GUCgCGU--UCCaGC- -5'
6363 5' -55 NC_001847.1 + 47532 0.66 0.914581
Target:  5'- cGGGCGCCAAagccgccGUCucaACGGCGCc-GGccUCGg -3'
miRNA:   3'- -CCCGUGGUU-------CAG---UGUCGCGuuCC--AGC- -5'
6363 5' -55 NC_001847.1 + 35606 0.66 0.909148
Target:  5'- cGGUACaucgcaaacgaAAGcgCGCGGCGCGGGGcUCGg -3'
miRNA:   3'- cCCGUGg----------UUCa-GUGUCGCGUUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 64683 0.75 0.47122
Target:  5'- cGGGCGCCcgcgcguGUCGCAGUGCGucAGGcgCGg -3'
miRNA:   3'- -CCCGUGGuu-----CAGUGUCGCGU--UCCa-GC- -5'
6363 5' -55 NC_001847.1 + 63302 0.74 0.490414
Target:  5'- -aGCACCGGGUCcaGCAGCGCGuGGUUc -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGUuCCAGc -5'
6363 5' -55 NC_001847.1 + 79571 0.74 0.490414
Target:  5'- gGGGCGCCGGGcUCGCGGCcucuucggGCGGGGgCGc -3'
miRNA:   3'- -CCCGUGGUUC-AGUGUCG--------CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 84548 0.74 0.500147
Target:  5'- aGGCGCCcgcGUCGCAGCGCuccAGGUa- -3'
miRNA:   3'- cCCGUGGuu-CAGUGUCGCGu--UCCAgc -5'
6363 5' -55 NC_001847.1 + 51830 0.74 0.529833
Target:  5'- aGGCGCCAAG-CGCccccguGCGCG-GGUCGa -3'
miRNA:   3'- cCCGUGGUUCaGUGu-----CGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 63103 0.67 0.875452
Target:  5'- cGGGUAcgccCCGGGgccgcCGCcGCGCAcGGGUCGg -3'
miRNA:   3'- -CCCGU----GGUUCa----GUGuCGCGU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 37325 0.72 0.601234
Target:  5'- -cGCGCCGAG-CACAGCGCuggcgugcGGUCa -3'
miRNA:   3'- ccCGUGGUUCaGUGUCGCGuu------CCAGc -5'
6363 5' -55 NC_001847.1 + 61185 0.72 0.611584
Target:  5'- aGGGCgGCUAGGUCGCcGUGagaGAGGUCu -3'
miRNA:   3'- -CCCG-UGGUUCAGUGuCGCg--UUCCAGc -5'
6363 5' -55 NC_001847.1 + 14990 0.72 0.62195
Target:  5'- aGGCACCGcaUCGCgAGCGCGccggaggacaAGGUCGc -3'
miRNA:   3'- cCCGUGGUucAGUG-UCGCGU----------UCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.