miRNA display CGI


Results 161 - 180 of 248 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 84548 0.74 0.500147
Target:  5'- aGGCGCCcgcGUCGCAGCGCuccAGGUa- -3'
miRNA:   3'- cCCGUGGuu-CAGUGUCGCGu--UCCAgc -5'
6363 5' -55 NC_001847.1 + 79571 0.74 0.490414
Target:  5'- gGGGCGCCGGGcUCGCGGCcucuucggGCGGGGgCGc -3'
miRNA:   3'- -CCCGUGGUUC-AGUGUCG--------CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 63302 0.74 0.490414
Target:  5'- -aGCACCGGGUCcaGCAGCGCGuGGUUc -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGUuCCAGc -5'
6363 5' -55 NC_001847.1 + 64683 0.75 0.47122
Target:  5'- cGGGCGCCcgcgcguGUCGCAGUGCGucAGGcgCGg -3'
miRNA:   3'- -CCCGUGGuu-----CAGUGUCGCGU--UCCa-GC- -5'
6363 5' -55 NC_001847.1 + 16577 0.67 0.882656
Target:  5'- cGGGacaGCgGGGUCgggGCGGCGUggGGUg- -3'
miRNA:   3'- -CCCg--UGgUUCAG---UGUCGCGuuCCAgc -5'
6363 5' -55 NC_001847.1 + 12571 0.67 0.882656
Target:  5'- cGGGCGCCGcGUaCGCGGCGCcc--UCGc -3'
miRNA:   3'- -CCCGUGGUuCA-GUGUCGCGuuccAGC- -5'
6363 5' -55 NC_001847.1 + 22614 0.67 0.882656
Target:  5'- uGGCAagCGAGUgGCcGCGCAGGGcgCGu -3'
miRNA:   3'- cCCGUg-GUUCAgUGuCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 54495 0.67 0.889632
Target:  5'- cGGCGCCGGGUCucccGCgAGCGCcgccGUCGc -3'
miRNA:   3'- cCCGUGGUUCAG----UG-UCGCGuuc-CAGC- -5'
6363 5' -55 NC_001847.1 + 14446 0.73 0.590907
Target:  5'- cGGCGCCGGGgugCGCGGCcGCGgccucuGGGUCu -3'
miRNA:   3'- cCCGUGGUUCa--GUGUCG-CGU------UCCAGc -5'
6363 5' -55 NC_001847.1 + 37325 0.72 0.601234
Target:  5'- -cGCGCCGAG-CACAGCGCuggcgugcGGUCa -3'
miRNA:   3'- ccCGUGGUUCaGUGUCGCGuu------CCAGc -5'
6363 5' -55 NC_001847.1 + 88236 0.71 0.694265
Target:  5'- cGGaGCCGAGgccggCGCGGCGCGGGG-CGc -3'
miRNA:   3'- cCCgUGGUUCa----GUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 61791 0.71 0.694265
Target:  5'- cGGGUggGCCGGGUCGCccuGGC-CAuGGUCGa -3'
miRNA:   3'- -CCCG--UGGUUCAGUG---UCGcGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 28324 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 70322 0.71 0.694265
Target:  5'- cGGCACCAGGUCGUAGUcuaCGAGGUgGc -3'
miRNA:   3'- cCCGUGGUUCAGUGUCGc--GUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 3978 0.71 0.673734
Target:  5'- aGGGCGCCGGGggccgggcgCGCGGCcccGCGGGG-CGc -3'
miRNA:   3'- -CCCGUGGUUCa--------GUGUCG---CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 91711 0.71 0.663412
Target:  5'- cGGGUcgcgacgccgGCCAGcagcaGCAGCGCGAGGUCc -3'
miRNA:   3'- -CCCG----------UGGUUcag--UGUCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 116135 0.72 0.642698
Target:  5'- cGGGCGCUggGgcgCGCGGCcCGAGG-CGc -3'
miRNA:   3'- -CCCGUGGuuCa--GUGUCGcGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 100010 0.72 0.632324
Target:  5'- uGGCgaGCCGAGgCACGGcCGCcAGGUCGc -3'
miRNA:   3'- cCCG--UGGUUCaGUGUC-GCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 14990 0.72 0.62195
Target:  5'- aGGCACCGcaUCGCgAGCGCGccggaggacaAGGUCGc -3'
miRNA:   3'- cCCGUGGUucAGUG-UCGCGU----------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 61185 0.72 0.611584
Target:  5'- aGGGCgGCUAGGUCGCcGUGagaGAGGUCu -3'
miRNA:   3'- -CCCG-UGGUUCAGUGuCGCg--UUCCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.