miRNA display CGI


Results 41 - 60 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 28324 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 70322 0.71 0.694265
Target:  5'- cGGCACCAGGUCGUAGUcuaCGAGGUgGc -3'
miRNA:   3'- cCCGUGGUUCAGUGUCGc--GUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 61791 0.71 0.694265
Target:  5'- cGGGUggGCCGGGUCGCccuGGC-CAuGGUCGa -3'
miRNA:   3'- -CCCG--UGGUUCAGUG---UCGcGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 88236 0.71 0.694265
Target:  5'- cGGaGCCGAGgccggCGCGGCGCGGGG-CGc -3'
miRNA:   3'- cCCgUGGUUCa----GUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 12435 0.71 0.704455
Target:  5'- cGGGCuCCAAGgcgccggCACAGCGCGcgcGG-CGg -3'
miRNA:   3'- -CCCGuGGUUCa------GUGUCGCGUu--CCaGC- -5'
6363 5' -55 NC_001847.1 + 82885 0.71 0.663412
Target:  5'- cGGGCgcgccgcaGCCAAGcCGCGGCGCGcGG-CGc -3'
miRNA:   3'- -CCCG--------UGGUUCaGUGUCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 48631 0.71 0.704455
Target:  5'- cGGGCGCCcAGcCGCcGCGCGAcGGUg- -3'
miRNA:   3'- -CCCGUGGuUCaGUGuCGCGUU-CCAgc -5'
6363 5' -55 NC_001847.1 + 100648 0.71 0.684021
Target:  5'- cGGCGCCAGGgccgCgcugcuGCGGCGgGGGGUCc -3'
miRNA:   3'- cCCGUGGUUCa---G------UGUCGCgUUCCAGc -5'
6363 5' -55 NC_001847.1 + 100523 0.71 0.673734
Target:  5'- uGGGCugCGGGUCGCGGagugGguGGG-CGg -3'
miRNA:   3'- -CCCGugGUUCAGUGUCg---CguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 45741 0.71 0.694265
Target:  5'- -aGuCGCCAAuGUC-CAGCGCcGGGUCGg -3'
miRNA:   3'- ccC-GUGGUU-CAGuGUCGCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 68835 0.7 0.763943
Target:  5'- aGGGCGCCGcgaagAGcUCG-GGCGCGAGG-CGg -3'
miRNA:   3'- -CCCGUGGU-----UC-AGUgUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 32130 0.7 0.763943
Target:  5'- cGGGCGCCGGGggCGgGG-GCGGGGgCGg -3'
miRNA:   3'- -CCCGUGGUUCa-GUgUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 46482 0.7 0.763943
Target:  5'- aGGGCcuuCCAcGUCGCAGCGUggccGAGcGUUGc -3'
miRNA:   3'- -CCCGu--GGUuCAGUGUCGCG----UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 83174 0.7 0.754273
Target:  5'- cGGcGCACCcAGugcaUCACuGcCGCGGGGUCGc -3'
miRNA:   3'- -CC-CGUGGuUC----AGUGuC-GCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 124164 0.7 0.763943
Target:  5'- aGGCGCCAAGagACuucGCGCGccGUCGc -3'
miRNA:   3'- cCCGUGGUUCagUGu--CGCGUucCAGC- -5'
6363 5' -55 NC_001847.1 + 51780 0.7 0.754273
Target:  5'- cGGCGCCAGcUCGCcccGCGCGucccGGUCGc -3'
miRNA:   3'- cCCGUGGUUcAGUGu--CGCGUu---CCAGC- -5'
6363 5' -55 NC_001847.1 + 27872 0.7 0.744492
Target:  5'- gGGGCGCCGAggacgcggacGUCGCGgaguGCGcCGAGGcCGa -3'
miRNA:   3'- -CCCGUGGUU----------CAGUGU----CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 1211 0.7 0.758155
Target:  5'- cGGGCGCCAGcUC-CAGCGCGcgccgcccgcaggccAGGUa- -3'
miRNA:   3'- -CCCGUGGUUcAGuGUCGCGU---------------UCCAgc -5'
6363 5' -55 NC_001847.1 + 45444 0.7 0.763943
Target:  5'- aGGGCGCCc-GUCGCGGCGCGc----- -3'
miRNA:   3'- -CCCGUGGuuCAGUGUCGCGUuccagc -5'
6363 5' -55 NC_001847.1 + 84696 0.7 0.763943
Target:  5'- cGGCuuGCCGuccuuGUCGCAGCGC-GGGUUc -3'
miRNA:   3'- cCCG--UGGUu----CAGUGUCGCGuUCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.