miRNA display CGI


Results 41 - 60 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 21962 0.76 0.390028
Target:  5'- cGGGCGCUggGcCGCGGCGCc-GGUUGc -3'
miRNA:   3'- -CCCGUGGuuCaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 103384 0.68 0.81911
Target:  5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3'
miRNA:   3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 74990 0.68 0.85252
Target:  5'- gGGGCGCCAGGcUCAguccgcCGGCggGCGGGGggccagCGg -3'
miRNA:   3'- -CCCGUGGUUC-AGU------GUCG--CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 2161 0.68 0.85252
Target:  5'- -aGCACCAGGUCucGCAGCGCccgcgccgccuGGG-CGg -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGu----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 60255 0.69 0.810301
Target:  5'- cGGCGCCGAcuUCGCAgGCGCuugcguGGUCa -3'
miRNA:   3'- cCCGUGGUUc-AGUGU-CGCGuu----CCAGc -5'
6363 5' -55 NC_001847.1 + 3944 0.72 0.641661
Target:  5'- cGGGCGgCGAG-CGCgacccacagcgccAGCGCGAGGUgGg -3'
miRNA:   3'- -CCCGUgGUUCaGUG-------------UCGCGUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 60857 0.77 0.365067
Target:  5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3'
miRNA:   3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 102436 0.78 0.311236
Target:  5'- cGGGCGCCuug-CACAGCGgGcAGGUCGg -3'
miRNA:   3'- -CCCGUGGuucaGUGUCGCgU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 6690 0.71 0.694265
Target:  5'- cGGCcgGCCGGG-CGCGcGCGCAGGGcCGa -3'
miRNA:   3'- cCCG--UGGUUCaGUGU-CGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 76400 0.69 0.773492
Target:  5'- gGGGCGCCGGGggcCGCGGCG-GGGG-Ca -3'
miRNA:   3'- -CCCGUGGUUCa--GUGUCGCgUUCCaGc -5'
6363 5' -55 NC_001847.1 + 58818 0.7 0.763943
Target:  5'- cGGCGCCuGGgC-CGGUGCGAgGGUCGg -3'
miRNA:   3'- cCCGUGGuUCaGuGUCGCGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 45741 0.71 0.694265
Target:  5'- -aGuCGCCAAuGUC-CAGCGCcGGGUCGg -3'
miRNA:   3'- ccC-GUGGUU-CAGuGUCGCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 65495 0.75 0.48077
Target:  5'- -cGUACCGGGUCGCGGCGCGgcuGGGacUCGc -3'
miRNA:   3'- ccCGUGGUUCAGUGUCGCGU---UCC--AGC- -5'
6363 5' -55 NC_001847.1 + 33534 0.68 0.836196
Target:  5'- aGGCGCCGGG-CGCGgGCGCcgaaGAGG-CGg -3'
miRNA:   3'- cCCGUGGUUCaGUGU-CGCG----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 67187 0.68 0.825173
Target:  5'- aGGGCGCgCAGGUagcacaCGCcgugccgagcggcgGGCGCGcGGUCGa -3'
miRNA:   3'- -CCCGUG-GUUCA------GUG--------------UCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 70286 0.69 0.792193
Target:  5'- -cGCGCCuggcgGGGUCGCGGCGCGccgcgcuGGUCu -3'
miRNA:   3'- ccCGUGG-----UUCAGUGUCGCGUu------CCAGc -5'
6363 5' -55 NC_001847.1 + 59848 0.68 0.844458
Target:  5'- gGGGCACCGgccAGgCGCGGuCGCcgAGGGcCGg -3'
miRNA:   3'- -CCCGUGGU---UCaGUGUC-GCG--UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 96847 0.65 0.931777
Target:  5'- aGGGCGCguCGGGg-GCGGCGguGGG-CGg -3'
miRNA:   3'- -CCCGUG--GUUCagUGUCGCguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 130628 0.68 0.85252
Target:  5'- aGGGCGCCGAGgccgaagaCGCGGagaucgGCGAGGaCGc -3'
miRNA:   3'- -CCCGUGGUUCa-------GUGUCg-----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 6957 0.68 0.844458
Target:  5'- aGGCGCgGGGUCGCGGCgGCGcuuccgcccgcGGGcCGc -3'
miRNA:   3'- cCCGUGgUUCAGUGUCG-CGU-----------UCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.