miRNA display CGI


Results 61 - 80 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 14443 0.66 0.902882
Target:  5'- uGGCGCCGAGcgCGCGGcCGCGcuGcUCGg -3'
miRNA:   3'- cCCGUGGUUCa-GUGUC-GCGUucC-AGC- -5'
6363 5' -55 NC_001847.1 + 2156 0.66 0.902882
Target:  5'- cGGGCGCCAGGgcUCGgGGaagaGCGGguGGUCc -3'
miRNA:   3'- -CCCGUGGUUC--AGUgUCg---CGUU--CCAGc -5'
6363 5' -55 NC_001847.1 + 61875 0.66 0.902882
Target:  5'- cGGCGCCcgcgGGGguugCACGGCgagcggaaguacGCGAGGUCc -3'
miRNA:   3'- cCCGUGG----UUCa---GUGUCG------------CGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 48207 0.66 0.902882
Target:  5'- cGGCcaggGCCGAGgagCGCAGCGCcgccaccauGGcGUCGa -3'
miRNA:   3'- cCCG----UGGUUCa--GUGUCGCGu--------UC-CAGC- -5'
6363 5' -55 NC_001847.1 + 21772 0.66 0.902882
Target:  5'- cGGCGCCGGGcC-CGGCGCc-GGcCGg -3'
miRNA:   3'- cCCGUGGUUCaGuGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 99183 0.66 0.902882
Target:  5'- uGGCGCCcucguGGUCcucGCGCGAGG-CGg -3'
miRNA:   3'- cCCGUGGu----UCAGuguCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 100873 0.66 0.902882
Target:  5'- cGGCGCCcAGcCGCcGCGCGccGGUCu -3'
miRNA:   3'- cCCGUGGuUCaGUGuCGCGUu-CCAGc -5'
6363 5' -55 NC_001847.1 + 104969 0.66 0.902882
Target:  5'- cGGGCGCCAGGgcUCGgGGaagaGCGGguGGUCc -3'
miRNA:   3'- -CCCGUGGUUC--AGUgUCg---CGUU--CCAGc -5'
6363 5' -55 NC_001847.1 + 124554 0.66 0.902882
Target:  5'- cGGCGCCGGccCGCGcGCGCGGGGg-- -3'
miRNA:   3'- cCCGUGGUUcaGUGU-CGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 68215 0.66 0.902882
Target:  5'- gGGGCGCaCGGGcCGCGGCG--GGGcCGc -3'
miRNA:   3'- -CCCGUG-GUUCaGUGUCGCguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 124585 0.66 0.902882
Target:  5'- cGGCGCCGGGcC-CGGCGCc-GGcCGg -3'
miRNA:   3'- cCCGUGGUUCaGuGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 116702 0.66 0.902242
Target:  5'- cGGCACCGcacggcuGGcCGCGGCGCAcguGGcCa -3'
miRNA:   3'- cCCGUGGU-------UCaGUGUCGCGUu--CCaGc -5'
6363 5' -55 NC_001847.1 + 90161 0.67 0.896375
Target:  5'- cGGGCgcaugGCCAAG-CGCAGCcuuGCGGGGcugcugCGg -3'
miRNA:   3'- -CCCG-----UGGUUCaGUGUCG---CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 48194 0.67 0.896375
Target:  5'- cGGGC-UCGGGgcgCGCGGCGCugcuGUCGa -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGCGuuc-CAGC- -5'
6363 5' -55 NC_001847.1 + 106077 0.67 0.895712
Target:  5'- gGGGCGCCGgcgccgcgcggccGGcgagCACGGCGCGcAGcUCGg -3'
miRNA:   3'- -CCCGUGGU-------------UCa---GUGUCGCGU-UCcAGC- -5'
6363 5' -55 NC_001847.1 + 66467 0.67 0.895712
Target:  5'- cGGGCACgGuagucucAGUCGCc-CGCAGGGgCGg -3'
miRNA:   3'- -CCCGUGgU-------UCAGUGucGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 3264 0.67 0.895712
Target:  5'- gGGGCGCCGgcgccgcgcggccGGcgagCACGGCGCGcAGcUCGg -3'
miRNA:   3'- -CCCGUGGU-------------UCa---GUGUCGCGU-UCcAGC- -5'
6363 5' -55 NC_001847.1 + 124715 0.67 0.894377
Target:  5'- cGGGCGCgGGGgcgGCAGCGCGaaccgcgcgggggaGGGcCGu -3'
miRNA:   3'- -CCCGUGgUUCag-UGUCGCGU--------------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 54495 0.67 0.889632
Target:  5'- cGGCGCCGGGUCucccGCgAGCGCcgccGUCGc -3'
miRNA:   3'- cCCGUGGUUCAG----UG-UCGCGuuc-CAGC- -5'
6363 5' -55 NC_001847.1 + 88002 0.67 0.889632
Target:  5'- cGGGC-CCGAGgggCGCGGCGuCAucGG-CGa -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGC-GUu-CCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.