miRNA display CGI


Results 61 - 80 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 101084 0.68 0.836196
Target:  5'- cGGGgGCCGGGUCGgCGGgGC-GGG-CGg -3'
miRNA:   3'- -CCCgUGGUUCAGU-GUCgCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 100873 0.66 0.902882
Target:  5'- cGGCGCCcAGcCGCcGCGCGccGGUCu -3'
miRNA:   3'- cCCGUGGuUCaGUGuCGCGUu-CCAGc -5'
6363 5' -55 NC_001847.1 + 100837 0.67 0.881946
Target:  5'- cGGGCggcuccgGCCAGGgcCGgAGCGCcggcccgccgGGGGUCGg -3'
miRNA:   3'- -CCCG-------UGGUUCa-GUgUCGCG----------UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 100758 0.67 0.882656
Target:  5'- cGGGguCCAGGUCGCcccGCGCcauGG-CGc -3'
miRNA:   3'- -CCCguGGUUCAGUGu--CGCGuu-CCaGC- -5'
6363 5' -55 NC_001847.1 + 100648 0.71 0.684021
Target:  5'- cGGCGCCAGGgccgCgcugcuGCGGCGgGGGGUCc -3'
miRNA:   3'- cCCGUGGUUCa---G------UGUCGCgUUCCAGc -5'
6363 5' -55 NC_001847.1 + 100523 0.71 0.673734
Target:  5'- uGGGCugCGGGUCGCGGagugGguGGG-CGg -3'
miRNA:   3'- -CCCGugGUUCAGUGUCg---CguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 100010 0.72 0.632324
Target:  5'- uGGCgaGCCGAGgCACGGcCGCcAGGUCGc -3'
miRNA:   3'- cCCG--UGGUUCaGUGUC-GCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 99943 0.65 0.931777
Target:  5'- aGGGCGCCcAGcCGCGcGCGCuccuccucgAAGGcCGc -3'
miRNA:   3'- -CCCGUGGuUCaGUGU-CGCG---------UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 99785 0.66 0.909148
Target:  5'- uGGGCGggGGGcagCGCcuguGGUGCGGGGUCGg -3'
miRNA:   3'- -CCCGUggUUCa--GUG----UCGCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 99183 0.66 0.902882
Target:  5'- uGGCGCCcucguGGUCcucGCGCGAGG-CGg -3'
miRNA:   3'- cCCGUGGu----UCAGuguCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 97946 0.68 0.859601
Target:  5'- cGGCACCGGGcgccUCGCaccgggcucucccGGCGCGAGG-Cu -3'
miRNA:   3'- cCCGUGGUUC----AGUG-------------UCGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 97943 0.68 0.85252
Target:  5'- aGGGCGCUc-GUgACAGCgGCGAGGg-- -3'
miRNA:   3'- -CCCGUGGuuCAgUGUCG-CGUUCCagc -5'
6363 5' -55 NC_001847.1 + 97891 0.66 0.926487
Target:  5'- cGGCGCgGAuGgcgaACAGCGCGccguccgccGGGUCGu -3'
miRNA:   3'- cCCGUGgUU-Cag--UGUCGCGU---------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 97431 0.65 0.931777
Target:  5'- cGGcGCGCCcAGcaGCAGCGCGcacgugacgAGGUCc -3'
miRNA:   3'- -CC-CGUGGuUCagUGUCGCGU---------UCCAGc -5'
6363 5' -55 NC_001847.1 + 96847 0.65 0.931777
Target:  5'- aGGGCGCguCGGGg-GCGGCGguGGG-CGg -3'
miRNA:   3'- -CCCGUG--GUUCagUGUCGCguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 95764 0.66 0.915173
Target:  5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3'
miRNA:   3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 95710 0.66 0.915173
Target:  5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3'
miRNA:   3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 95656 0.66 0.915173
Target:  5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3'
miRNA:   3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 95306 0.67 0.889632
Target:  5'- uGGCGCCuccAGgCGCGGCGCcggcAGGGcCGa -3'
miRNA:   3'- cCCGUGGu--UCaGUGUCGCG----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 94234 0.66 0.909148
Target:  5'- gGGGCGCCcg--CGCGGCGCcguGGagCGg -3'
miRNA:   3'- -CCCGUGGuucaGUGUCGCGuu-CCa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.