miRNA display CGI


Results 61 - 80 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 2161 0.68 0.85252
Target:  5'- -aGCACCAGGUCucGCAGCGCccgcgccgccuGGG-CGg -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGu----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 34286 0.72 0.62195
Target:  5'- uGGGCGCCGcGcUCGCGGCcgucaGCGAGGcuUCGg -3'
miRNA:   3'- -CCCGUGGUuC-AGUGUCG-----CGUUCC--AGC- -5'
6363 5' -55 NC_001847.1 + 135012 0.69 0.801326
Target:  5'- gGGGC-CCGAGgccCGCGG-GCGGGGcCGg -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 106822 0.68 0.81911
Target:  5'- gGGGCGCCGGGcC-CGGCGCccgccucucgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----------UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 41070 0.68 0.822585
Target:  5'- cGGGCAgCAAGUCccgcagggugucgggGgugaugguagcCGGCGCAcuaGGGUCGa -3'
miRNA:   3'- -CCCGUgGUUCAG---------------U-----------GUCGCGU---UCCAGC- -5'
6363 5' -55 NC_001847.1 + 106770 0.74 0.490414
Target:  5'- gGGGCGCCGucUC-CGGCGCGAGGgCGc -3'
miRNA:   3'- -CCCGUGGUucAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 131137 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 134943 0.7 0.763943
Target:  5'- cGGGCGCCGGGggCGgGG-GCGGGGgCGg -3'
miRNA:   3'- -CCCGUGGUUCa-GUgUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 134577 0.69 0.773492
Target:  5'- cGGCGCCgGAGaCGCGGCGCuGGcGUCc -3'
miRNA:   3'- cCCGUGG-UUCaGUGUCGCGuUC-CAGc -5'
6363 5' -55 NC_001847.1 + 12435 0.71 0.704455
Target:  5'- cGGGCuCCAAGgcgccggCACAGCGCGcgcGG-CGg -3'
miRNA:   3'- -CCCGuGGUUCa------GUGUCGCGUu--CCaGC- -5'
6363 5' -55 NC_001847.1 + 60857 0.77 0.365067
Target:  5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3'
miRNA:   3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 21962 0.76 0.390028
Target:  5'- cGGGCGCUggGcCGCGGCGCc-GGUUGc -3'
miRNA:   3'- -CCCGUGGuuCaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 74990 0.68 0.85252
Target:  5'- gGGGCGCCAGGcUCAguccgcCGGCggGCGGGGggccagCGg -3'
miRNA:   3'- -CCCGUGGUUC-AGU------GUCG--CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 72908 0.67 0.868024
Target:  5'- uGGcGCGCCAcgaggcGGUCgGCGGCGUcGGGUUu -3'
miRNA:   3'- -CC-CGUGGU------UCAG-UGUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 102701 0.67 0.882656
Target:  5'- aGGGCGCCGGGcggGCGGCGaAAGGcCc -3'
miRNA:   3'- -CCCGUGGUUCag-UGUCGCgUUCCaGc -5'
6363 5' -55 NC_001847.1 + 34238 0.67 0.889632
Target:  5'- aGGC-CCAguacgcGG-CGCGGCGCGAGG-CGc -3'
miRNA:   3'- cCCGuGGU------UCaGUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 77666 0.67 0.868024
Target:  5'- cGGGCGCCGAGgUACugcuggccgAGCGCuucAAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUG---------UCGCG---UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 68846 0.68 0.847707
Target:  5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3'
miRNA:   3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 70511 0.68 0.860378
Target:  5'- cGGGCAUCAAGcaGCGGCuGCuGGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCagUGUCG-CGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 60739 0.68 0.860378
Target:  5'- cGGGCG-CGGG-CGCGGCGCGGuGG-CGg -3'
miRNA:   3'- -CCCGUgGUUCaGUGUCGCGUU-CCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.