miRNA display CGI


Results 81 - 100 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 126242 0.69 0.810301
Target:  5'- gGGGCGuCCGGGgucgucggCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- -CCCGU-GGUUCa-------GUgUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 23429 0.69 0.810301
Target:  5'- gGGGCGuCCGGGgucgucggCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- -CCCGU-GGUUCa-------GUgUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 131524 0.69 0.810301
Target:  5'- -uGCGCCAGGa-GCGGCGCAuguuuGGUCu -3'
miRNA:   3'- ccCGUGGUUCagUGUCGCGUu----CCAGc -5'
6363 5' -55 NC_001847.1 + 102582 0.69 0.801326
Target:  5'- uGGCguccGCCAGGUCGCccAGCGcCGAGGgcugCGc -3'
miRNA:   3'- cCCG----UGGUUCAGUG--UCGC-GUUCCa---GC- -5'
6363 5' -55 NC_001847.1 + 53837 0.69 0.801326
Target:  5'- gGGGCGCUgaaGAG-C-CGGCGCgGGGGUCa -3'
miRNA:   3'- -CCCGUGG---UUCaGuGUCGCG-UUCCAGc -5'
6363 5' -55 NC_001847.1 + 32199 0.69 0.801326
Target:  5'- gGGGC-CCGAGgccCGCGG-GCGGGGcCGg -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 118831 0.69 0.801326
Target:  5'- aGGGCgcggaGCCGAGggCGCgAGCGCGaguaagaccGGGUUGg -3'
miRNA:   3'- -CCCG-----UGGUUCa-GUG-UCGCGU---------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 46533 0.69 0.792193
Target:  5'- gGGGCGgCGgcGG-CGC-GCGCGAGGUCc -3'
miRNA:   3'- -CCCGUgGU--UCaGUGuCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 40170 0.69 0.792193
Target:  5'- uGGGCGuCCuGGUCGCGGCucuGCGAGuaGUUGg -3'
miRNA:   3'- -CCCGU-GGuUCAGUGUCG---CGUUC--CAGC- -5'
6363 5' -55 NC_001847.1 + 69689 0.69 0.792193
Target:  5'- uGGGCGCgGGG-C-CGGCGCucGGUCc -3'
miRNA:   3'- -CCCGUGgUUCaGuGUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 91769 0.69 0.773492
Target:  5'- cGGGCGCUccGUCgGCGGCGCu-GGcCGc -3'
miRNA:   3'- -CCCGUGGuuCAG-UGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 118881 0.69 0.773492
Target:  5'- cGGGCGCUcGGUgCACGGgGcCGGGGcCGg -3'
miRNA:   3'- -CCCGUGGuUCA-GUGUCgC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 31764 0.69 0.773492
Target:  5'- cGGCGCCgGAGaCGCGGCGCuGGcGUCc -3'
miRNA:   3'- cCCGUGG-UUCaGUGUCGCGuUC-CAGc -5'
6363 5' -55 NC_001847.1 + 32373 0.69 0.770641
Target:  5'- gGGGCGCCGGcGUCGCGgGCGUcgcgccuugcguggGGGGUUu -3'
miRNA:   3'- -CCCGUGGUU-CAGUGU-CGCG--------------UUCCAGc -5'
6363 5' -55 NC_001847.1 + 56385 0.68 0.827745
Target:  5'- cGGCGCuCGGGUCGgggaggucggcCGGCGCGGGGa-- -3'
miRNA:   3'- cCCGUG-GUUCAGU-----------GUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 43303 0.68 0.827745
Target:  5'- -cGCACCAGGagGC-GUGCA-GGUCGg -3'
miRNA:   3'- ccCGUGGUUCagUGuCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 30977 0.68 0.822585
Target:  5'- cGGGCGCaaggacauggccgcgCAGGgCGCGGCGCuGGGGcUCGg -3'
miRNA:   3'- -CCCGUG---------------GUUCaGUGUCGCG-UUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 104191 0.68 0.81911
Target:  5'- gGGGCACCGcGcgCGCAGCGCcguuuaugcgAAGGcCu -3'
miRNA:   3'- -CCCGUGGUuCa-GUGUCGCG----------UUCCaGc -5'
6363 5' -55 NC_001847.1 + 30803 0.68 0.81911
Target:  5'- cGGGCGCCu--UCGCGcGCGcCGAGGcCGc -3'
miRNA:   3'- -CCCGUGGuucAGUGU-CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 571 0.68 0.81911
Target:  5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3'
miRNA:   3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.