miRNA display CGI


Results 81 - 100 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 43244 0.68 0.836196
Target:  5'- gGGGCGCgCGGGcggCGCGGCGCccGGGGg-- -3'
miRNA:   3'- -CCCGUG-GUUCa--GUGUCGCG--UUCCagc -5'
6363 5' -55 NC_001847.1 + 43303 0.68 0.827745
Target:  5'- -cGCACCAGGagGC-GUGCA-GGUCGg -3'
miRNA:   3'- ccCGUGGUUCagUGuCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 45444 0.7 0.763943
Target:  5'- aGGGCGCCc-GUCGCGGCGCGc----- -3'
miRNA:   3'- -CCCGUGGuuCAGUGUCGCGUuccagc -5'
6363 5' -55 NC_001847.1 + 45741 0.71 0.694265
Target:  5'- -aGuCGCCAAuGUC-CAGCGCcGGGUCGg -3'
miRNA:   3'- ccC-GUGGUU-CAGuGUCGCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 46096 0.66 0.909148
Target:  5'- cGGcGCGCCAugccGUCGCccAGCGCGcacacGGcGUCGu -3'
miRNA:   3'- -CC-CGUGGUu---CAGUG--UCGCGU-----UC-CAGC- -5'
6363 5' -55 NC_001847.1 + 46317 0.66 0.920953
Target:  5'- -aGCGCCGAG-CGCAGCacggccgcccGCGGGGcCGc -3'
miRNA:   3'- ccCGUGGUUCaGUGUCG----------CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 46482 0.7 0.763943
Target:  5'- aGGGCcuuCCAcGUCGCAGCGUggccGAGcGUUGc -3'
miRNA:   3'- -CCCGu--GGUuCAGUGUCGCG----UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 46533 0.69 0.792193
Target:  5'- gGGGCGgCGgcGG-CGC-GCGCGAGGUCc -3'
miRNA:   3'- -CCCGUgGU--UCaGUGuCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 47532 0.66 0.914581
Target:  5'- cGGGCGCCAAagccgccGUCucaACGGCGCc-GGccUCGg -3'
miRNA:   3'- -CCCGUGGUU-------CAG---UGUCGCGuuCC--AGC- -5'
6363 5' -55 NC_001847.1 + 47646 0.65 0.931777
Target:  5'- uGGCGCUGAGUgCGCAGCGaguacGUCa -3'
miRNA:   3'- cCCGUGGUUCA-GUGUCGCguuc-CAGc -5'
6363 5' -55 NC_001847.1 + 48194 0.67 0.896375
Target:  5'- cGGGC-UCGGGgcgCGCGGCGCugcuGUCGa -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGCGuuc-CAGC- -5'
6363 5' -55 NC_001847.1 + 48207 0.66 0.902882
Target:  5'- cGGCcaggGCCGAGgagCGCAGCGCcgccaccauGGcGUCGa -3'
miRNA:   3'- cCCG----UGGUUCa--GUGUCGCGu--------UC-CAGC- -5'
6363 5' -55 NC_001847.1 + 48631 0.71 0.704455
Target:  5'- cGGGCGCCcAGcCGCcGCGCGAcGGUg- -3'
miRNA:   3'- -CCCGUGGuUCaGUGuCGCGUU-CCAgc -5'
6363 5' -55 NC_001847.1 + 48699 0.66 0.926487
Target:  5'- cGGCGuCCAGGcagCGCGGCGCGaugaagcggaAGGaCGa -3'
miRNA:   3'- cCCGU-GGUUCa--GUGUCGCGU----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 48845 0.83 0.168244
Target:  5'- gGGGCGCCucGgccgCGCGGCGCGAGGUaCGg -3'
miRNA:   3'- -CCCGUGGuuCa---GUGUCGCGUUCCA-GC- -5'
6363 5' -55 NC_001847.1 + 48987 0.67 0.889632
Target:  5'- cGGCcucACCGGGggaggggC-CGGCGCGAGGUUa -3'
miRNA:   3'- cCCG---UGGUUCa------GuGUCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 49508 0.7 0.73461
Target:  5'- cGGCGCCGcuUCGCcgGGCGCGGGGcUCc -3'
miRNA:   3'- cCCGUGGUucAGUG--UCGCGUUCC-AGc -5'
6363 5' -55 NC_001847.1 + 49592 0.7 0.724637
Target:  5'- cGGCGCCuGGgCGCAGCGgGAGcUCGg -3'
miRNA:   3'- cCCGUGGuUCaGUGUCGCgUUCcAGC- -5'
6363 5' -55 NC_001847.1 + 49960 0.66 0.915173
Target:  5'- cGGCGCCGAG-UAC-GCGCA-GGcCGu -3'
miRNA:   3'- cCCGUGGUUCaGUGuCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 51524 0.66 0.920953
Target:  5'- cGGCGCCGgcaggcGGggGCGGCGCccAGGcGUCGg -3'
miRNA:   3'- cCCGUGGU------UCagUGUCGCG--UUC-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.