miRNA display CGI


Results 81 - 100 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 43244 0.68 0.836196
Target:  5'- gGGGCGCgCGGGcggCGCGGCGCccGGGGg-- -3'
miRNA:   3'- -CCCGUG-GUUCa--GUGUCGCG--UUCCagc -5'
6363 5' -55 NC_001847.1 + 33534 0.68 0.836196
Target:  5'- aGGCGCCGGG-CGCGgGCGCcgaaGAGG-CGg -3'
miRNA:   3'- cCCGUGGUUCaGUGU-CGCG----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 41070 0.68 0.822585
Target:  5'- cGGGCAgCAAGUCccgcagggugucgggGgugaugguagcCGGCGCAcuaGGGUCGa -3'
miRNA:   3'- -CCCGUgGUUCAG---------------U-----------GUCGCGU---UCCAGC- -5'
6363 5' -55 NC_001847.1 + 122574 0.69 0.782912
Target:  5'- aGGGCGCCGcGUaCGCGGCGCcc-GUUGc -3'
miRNA:   3'- -CCCGUGGUuCA-GUGUCGCGuucCAGC- -5'
6363 5' -55 NC_001847.1 + 8110 0.68 0.85252
Target:  5'- cGGCGCCAg--CGCAgGCGCGGGGcCc -3'
miRNA:   3'- cCCGUGGUucaGUGU-CGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 2161 0.68 0.85252
Target:  5'- -aGCACCAGGUCucGCAGCGCccgcgccgccuGGG-CGg -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGu----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 6957 0.68 0.844458
Target:  5'- aGGCGCgGGGUCGCGGCgGCGcuuccgcccgcGGGcCGc -3'
miRNA:   3'- cCCGUGgUUCAGUGUCG-CGU-----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 74990 0.68 0.85252
Target:  5'- gGGGCGCCAGGcUCAguccgcCGGCggGCGGGGggccagCGg -3'
miRNA:   3'- -CCCGUGGUUC-AGU------GUCG--CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 101170 0.68 0.860378
Target:  5'- gGGGC-CgGGGUCGgGGCGC--GGUCu -3'
miRNA:   3'- -CCCGuGgUUCAGUgUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 15785 0.68 0.860378
Target:  5'- cGGCGgCAAGcgccgCGCGGCGgGAGG-CGg -3'
miRNA:   3'- cCCGUgGUUCa----GUGUCGCgUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 10626 0.68 0.85252
Target:  5'- uGGGCGCCAuGUaccuaGCGGUGCcuGGGgacgCGg -3'
miRNA:   3'- -CCCGUGGUuCAg----UGUCGCGu-UCCa---GC- -5'
6363 5' -55 NC_001847.1 + 101084 0.68 0.836196
Target:  5'- cGGGgGCCGGGUCGgCGGgGC-GGG-CGg -3'
miRNA:   3'- -CCCgUGGUUCAGU-GUCgCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 122124 0.69 0.782912
Target:  5'- -cGCugCAGGUCGCGacggccggcGCGCAGGG-CGc -3'
miRNA:   3'- ccCGugGUUCAGUGU---------CGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 3427 0.82 0.181663
Target:  5'- gGGGCGCCAGG-CGCAGCcCAggGGGUCGa -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGcGU--UCCAGC- -5'
6363 5' -55 NC_001847.1 + 59940 0.67 0.868024
Target:  5'- aGGGCGCCAcgcaagcGUC-CGGCGUGGcGUCGu -3'
miRNA:   3'- -CCCGUGGUu------CAGuGUCGCGUUcCAGC- -5'
6363 5' -55 NC_001847.1 + 4608 0.67 0.882656
Target:  5'- aGGCgGCCAcgucGUCGCAGCGCucuGGGa-- -3'
miRNA:   3'- cCCG-UGGUu---CAGUGUCGCGu--UCCagc -5'
6363 5' -55 NC_001847.1 + 100837 0.67 0.881946
Target:  5'- cGGGCggcuccgGCCAGGgcCGgAGCGCcggcccgccgGGGGUCGg -3'
miRNA:   3'- -CCCG-------UGGUUCa-GUgUCGCG----------UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 34642 0.67 0.868024
Target:  5'- -cGCGCCGAGgccgaGCGGCGCGccgAGGgggCGg -3'
miRNA:   3'- ccCGUGGUUCag---UGUCGCGU---UCCa--GC- -5'
6363 5' -55 NC_001847.1 + 116114 0.68 0.860378
Target:  5'- cGGGCcuGCCGgcggGGUCAC-GCGCGaagAGGcCGa -3'
miRNA:   3'- -CCCG--UGGU----UCAGUGuCGCGU---UCCaGC- -5'
6363 5' -55 NC_001847.1 + 60739 0.68 0.860378
Target:  5'- cGGGCG-CGGG-CGCGGCGCGGuGG-CGg -3'
miRNA:   3'- -CCCGUgGUUCaGUGUCGCGUU-CCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.