miRNA display CGI


Results 101 - 120 of 248 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 59940 0.67 0.868024
Target:  5'- aGGGCGCCAcgcaagcGUC-CGGCGUGGcGUCGu -3'
miRNA:   3'- -CCCGUGGUu------CAGuGUCGCGUUcCAGC- -5'
6363 5' -55 NC_001847.1 + 58639 0.67 0.874719
Target:  5'- uGGGCcacgaagauuuccGCCGGGUCGCAcGCuuGCGGcGGUUGg -3'
miRNA:   3'- -CCCG-------------UGGUUCAGUGU-CG--CGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 11184 0.67 0.875452
Target:  5'- gGGGCuGCCGcuGGUCcgcGCGGgGCu-GGUCGa -3'
miRNA:   3'- -CCCG-UGGU--UCAG---UGUCgCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 130952 0.67 0.875452
Target:  5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5'
6363 5' -55 NC_001847.1 + 77666 0.67 0.868024
Target:  5'- cGGGCGCCGAGgUACugcuggccgAGCGCuucAAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUG---------UCGCG---UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 34642 0.67 0.868024
Target:  5'- -cGCGCCGAGgccgaGCGGCGCGccgAGGgggCGg -3'
miRNA:   3'- ccCGUGGUUCag---UGUCGCGU---UCCa--GC- -5'
6363 5' -55 NC_001847.1 + 4608 0.67 0.882656
Target:  5'- aGGCgGCCAcgucGUCGCAGCGCucuGGGa-- -3'
miRNA:   3'- cCCG-UGGUu---CAGUGUCGCGu--UCCagc -5'
6363 5' -55 NC_001847.1 + 125427 0.67 0.882656
Target:  5'- uGGCAagCGAGUgGCcGCGCAGGGcgCGu -3'
miRNA:   3'- cCCGUg-GUUCAgUGuCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 35520 0.67 0.889632
Target:  5'- -cGCGCCGAG-CGCAuccucgGCGAGGUCGu -3'
miRNA:   3'- ccCGUGGUUCaGUGUcg----CGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 100758 0.67 0.882656
Target:  5'- cGGGguCCAGGUCGCcccGCGCcauGG-CGc -3'
miRNA:   3'- -CCCguGGUUCAGUGu--CGCGuu-CCaGC- -5'
6363 5' -55 NC_001847.1 + 34238 0.67 0.889632
Target:  5'- aGGC-CCAguacgcGG-CGCGGCGCGAGG-CGc -3'
miRNA:   3'- cCCGuGGU------UCaGUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 100837 0.67 0.881946
Target:  5'- cGGGCggcuccgGCCAGGgcCGgAGCGCcggcccgccgGGGGUCGg -3'
miRNA:   3'- -CCCG-------UGGUUCa-GUgUCGCG----------UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 102701 0.67 0.882656
Target:  5'- aGGGCGCCGGGcggGCGGCGaAAGGcCc -3'
miRNA:   3'- -CCCGUGGUUCag-UGUCGCgUUCCaGc -5'
6363 5' -55 NC_001847.1 + 43244 0.68 0.836196
Target:  5'- gGGGCGCgCGGGcggCGCGGCGCccGGGGg-- -3'
miRNA:   3'- -CCCGUG-GUUCa--GUGUCGCG--UUCCagc -5'
6363 5' -55 NC_001847.1 + 19895 0.68 0.836196
Target:  5'- cGGGCGCgAGGUagaAGCGCAcgagGGcGUCGc -3'
miRNA:   3'- -CCCGUGgUUCAgugUCGCGU----UC-CAGC- -5'
6363 5' -55 NC_001847.1 + 68846 0.68 0.847707
Target:  5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3'
miRNA:   3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 59848 0.68 0.844458
Target:  5'- gGGGCACCGgccAGgCGCGGuCGCcgAGGGcCGg -3'
miRNA:   3'- -CCCGUGGU---UCaGUGUC-GCG--UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 2161 0.68 0.85252
Target:  5'- -aGCACCAGGUCucGCAGCGCccgcgccgccuGGG-CGg -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGu----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 97943 0.68 0.85252
Target:  5'- aGGGCGCUc-GUgACAGCgGCGAGGg-- -3'
miRNA:   3'- -CCCGUGGuuCAgUGUCG-CGUUCCagc -5'
6363 5' -55 NC_001847.1 + 8110 0.68 0.85252
Target:  5'- cGGCGCCAg--CGCAgGCGCGGGGcCc -3'
miRNA:   3'- cCCGUGGUucaGUGU-CGCGUUCCaGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.