miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 117383 1.09 0.00224
Target:  5'- gCGCAAGUGGAUGCUCUGCGAGCGCGAg -3'
miRNA:   3'- -GCGUUCACCUACGAGACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 18634 0.81 0.161709
Target:  5'- gCGCAGGcagaGGUGCUCgGCGAGCGCGAc -3'
miRNA:   3'- -GCGUUCac--CUACGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 116676 0.76 0.344473
Target:  5'- uGCGuGUGGGUccgGCgCUGCGGGCGCGGc -3'
miRNA:   3'- gCGUuCACCUA---CGaGACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 77507 0.76 0.355512
Target:  5'- aGUcGGUGGccggggagcucgcgcGUGC-CUGCGAGCGCGAg -3'
miRNA:   3'- gCGuUCACC---------------UACGaGACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 21861 0.75 0.402108
Target:  5'- aGCAGGUGG-UGCgggggCUGCG-GCGCGc -3'
miRNA:   3'- gCGUUCACCuACGa----GACGCuCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 7242 0.75 0.410828
Target:  5'- gGCuGGUcGGGUgGCUgUGCGGGCGCGGc -3'
miRNA:   3'- gCGuUCA-CCUA-CGAgACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 125465 0.74 0.437676
Target:  5'- gGCGGGUcGGcggcaGCUCgcgGCGGGCGCGAg -3'
miRNA:   3'- gCGUUCA-CCua---CGAGa--CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 70698 0.72 0.564039
Target:  5'- cCGCGGGcGGcgGCgggggCgcccgcgGCGAGCGCGAg -3'
miRNA:   3'- -GCGUUCaCCuaCGa----Ga------CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 14562 0.72 0.574255
Target:  5'- cCGCAGcGcGGGUGCUg-GCGGGCGCGc -3'
miRNA:   3'- -GCGUU-CaCCUACGAgaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 42526 0.71 0.594808
Target:  5'- cCGUccGUGGAaaagcUGCUCgGUGAGgGCGAg -3'
miRNA:   3'- -GCGuuCACCU-----ACGAGaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 64209 0.71 0.594808
Target:  5'- gCGCGGGUcgGGGUGCcCggGCGgcGGCGCGAa -3'
miRNA:   3'- -GCGUUCA--CCUACGaGa-CGC--UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 20071 0.71 0.605129
Target:  5'- aGCGGcGUGGcgGCUCccGCG-GCGCGGc -3'
miRNA:   3'- gCGUU-CACCuaCGAGa-CGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 93752 0.71 0.625827
Target:  5'- gCGCGGuccgGGAgcgGCUgaGCGAGCGUGAc -3'
miRNA:   3'- -GCGUUca--CCUa--CGAgaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 53584 0.7 0.635151
Target:  5'- gGCGAcGUGGAUGCcuuUUUGCGGGCcacggugGCGGg -3'
miRNA:   3'- gCGUU-CACCUACG---AGACGCUCG-------CGCU- -5'
6364 5' -56.1 NC_001847.1 + 112099 0.7 0.636187
Target:  5'- gCGCAAgGUGGAcugGCUCgaGCG-GCGCGu -3'
miRNA:   3'- -GCGUU-CACCUa--CGAGa-CGCuCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 56341 0.7 0.667214
Target:  5'- gGCGAaggGGuccacAUGCUCcGCGGGCGCGGg -3'
miRNA:   3'- gCGUUca-CC-----UACGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 41639 0.7 0.675454
Target:  5'- gGCGAGUGGGUGCggauccaccCGAcGCGCGGc -3'
miRNA:   3'- gCGUUCACCUACGagac-----GCU-CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 49725 0.7 0.687768
Target:  5'- uGCAAGUGGgcGC-CgGCGAG-GCGGu -3'
miRNA:   3'- gCGUUCACCuaCGaGaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 106099 0.7 0.687768
Target:  5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3'
miRNA:   3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 3286 0.7 0.687768
Target:  5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3'
miRNA:   3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.