miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 18634 0.81 0.161709
Target:  5'- gCGCAGGcagaGGUGCUCgGCGAGCGCGAc -3'
miRNA:   3'- -GCGUUCac--CUACGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 59546 0.68 0.786186
Target:  5'- gGCAggcGGUGGggGCg--GCGGGgGCGGu -3'
miRNA:   3'- gCGU---UCACCuaCGagaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 1920 0.68 0.795403
Target:  5'- gGCAGGUGGcgagGCUUaGCcGGCGCGc -3'
miRNA:   3'- gCGUUCACCua--CGAGaCGcUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 81106 0.66 0.885011
Target:  5'- uCGCccAGUGGcUGCUCca-GAGCGCGc -3'
miRNA:   3'- -GCGu-UCACCuACGAGacgCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 14562 0.72 0.574255
Target:  5'- cCGCAGcGcGGGUGCUg-GCGGGCGCGc -3'
miRNA:   3'- -GCGUU-CaCCUACGAgaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 53584 0.7 0.635151
Target:  5'- gGCGAcGUGGAUGCcuuUUUGCGGGCcacggugGCGGg -3'
miRNA:   3'- gCGUU-CACCUACG---AGACGCUCG-------CGCU- -5'
6364 5' -56.1 NC_001847.1 + 106099 0.7 0.687768
Target:  5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3'
miRNA:   3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 19862 0.69 0.709144
Target:  5'- cCGCu-GUGGAcacGCUCaucauggcggcgcugGCGGGCGCGAg -3'
miRNA:   3'- -GCGuuCACCUa--CGAGa--------------CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 86413 0.69 0.73816
Target:  5'- gCGCAGcucGUGGAUuuguugGCggcgCUGCGcGGCGCGGg -3'
miRNA:   3'- -GCGUU---CACCUA------CGa---GACGC-UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 100508 0.68 0.776827
Target:  5'- gGCGgugcGGUGuGGUGggCUGCGGGuCGCGGa -3'
miRNA:   3'- gCGU----UCAC-CUACgaGACGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 119026 0.68 0.757721
Target:  5'- cCGCAGGUGGG-GCgcacgCUGUGGGaaGCGGu -3'
miRNA:   3'- -GCGUUCACCUaCGa----GACGCUCg-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 33180 0.69 0.73816
Target:  5'- aGCGGcUGGccgGCUCUGCGcccgacuuggcGGCGCGGg -3'
miRNA:   3'- gCGUUcACCua-CGAGACGC-----------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 77507 0.76 0.355512
Target:  5'- aGUcGGUGGccggggagcucgcgcGUGC-CUGCGAGCGCGAg -3'
miRNA:   3'- gCGuUCACC---------------UACGaGACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 7545 0.68 0.767336
Target:  5'- aGCAcauacaGGAUGCUCaGCGcauGCGCGAc -3'
miRNA:   3'- gCGUuca---CCUACGAGaCGCu--CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 21861 0.75 0.402108
Target:  5'- aGCAGGUGG-UGCgggggCUGCG-GCGCGc -3'
miRNA:   3'- gCGUUCACCuACGa----GACGCuCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 133392 0.69 0.737171
Target:  5'- cCGCGgcgcGGUGGAguacCUCUGCGcgcggcuggccgcGGCGCGGc -3'
miRNA:   3'- -GCGU----UCACCUac--GAGACGC-------------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 134820 0.68 0.767336
Target:  5'- aCGCGGgcGUGGAgcgcgaaGCUCcgGCGGGgCGCGGg -3'
miRNA:   3'- -GCGUU--CACCUa------CGAGa-CGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 96315 0.68 0.786186
Target:  5'- cCGCGGG-GGAUcGCUCggugucgGUGGGCgGCGGg -3'
miRNA:   3'- -GCGUUCaCCUA-CGAGa------CGCUCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 7242 0.75 0.410828
Target:  5'- gGCuGGUcGGGUgGCUgUGCGGGCGCGGc -3'
miRNA:   3'- gCGuUCA-CCUA-CGAgACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 49725 0.7 0.687768
Target:  5'- uGCAAGUGGgcGC-CgGCGAG-GCGGu -3'
miRNA:   3'- gCGUUCACCuaCGaGaCGCUCgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.