miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 10852 0.67 0.822112
Target:  5'- gGCGcGUGGccgagGCgcgGCGGGCGCGGg -3'
miRNA:   3'- gCGUuCACCua---CGagaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 134194 0.67 0.822112
Target:  5'- gCGCAGcGUGGA-GCg--GCGcGCGCGGg -3'
miRNA:   3'- -GCGUU-CACCUaCGagaCGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 127733 0.67 0.822112
Target:  5'- gGCAAGccgccGGUGCcgUCUGcCGAGCGCGc -3'
miRNA:   3'- gCGUUCac---CUACG--AGAC-GCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 58088 0.67 0.81689
Target:  5'- cCGC-AGcGGGUGCcgcgccgcuacuacuUCUGCG-GCGCGGc -3'
miRNA:   3'- -GCGuUCaCCUACG---------------AGACGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 62903 0.67 0.813374
Target:  5'- aGCGGGUGGcgcggGUGCUCggggcccGCGGGCGg-- -3'
miRNA:   3'- gCGUUCACC-----UACGAGa------CGCUCGCgcu -5'
6364 5' -56.1 NC_001847.1 + 119551 0.67 0.804469
Target:  5'- gGCAAG-GGgcGCgcggccagacUCUGCGGGCaGCGGc -3'
miRNA:   3'- gCGUUCaCCuaCG----------AGACGCUCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 61317 0.67 0.804469
Target:  5'- gCGCGGGUGcgcGggGCgggGCGGGCGCGc -3'
miRNA:   3'- -GCGUUCAC---CuaCGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 47850 0.67 0.804469
Target:  5'- uCGCAGGaGGucgcGUGCUgcGCGGGCGCGc -3'
miRNA:   3'- -GCGUUCaCC----UACGAgaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 1920 0.68 0.795403
Target:  5'- gGCAGGUGGcgagGCUUaGCcGGCGCGc -3'
miRNA:   3'- gCGUUCACCua--CGAGaCGcUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 55502 0.68 0.795403
Target:  5'- gGC-AGUGGuucgGCg--GCGAGCGCGu -3'
miRNA:   3'- gCGuUCACCua--CGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 86219 0.68 0.795403
Target:  5'- uGCAAGUGGAgaGC-CUGCaccGCGUGGa -3'
miRNA:   3'- gCGUUCACCUa-CGaGACGcu-CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 96315 0.68 0.786186
Target:  5'- cCGCGGG-GGAUcGCUCggugucgGUGGGCgGCGGg -3'
miRNA:   3'- -GCGUUCaCCUA-CGAGa------CGCUCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 59546 0.68 0.786186
Target:  5'- gGCAggcGGUGGggGCg--GCGGGgGCGGu -3'
miRNA:   3'- gCGU---UCACCuaCGagaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 100508 0.68 0.776827
Target:  5'- gGCGgugcGGUGuGGUGggCUGCGGGuCGCGGa -3'
miRNA:   3'- gCGU----UCAC-CUACgaGACGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 134820 0.68 0.767336
Target:  5'- aCGCGGgcGUGGAgcgcgaaGCUCcgGCGGGgCGCGGg -3'
miRNA:   3'- -GCGUU--CACCUa------CGAGa-CGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 7545 0.68 0.767336
Target:  5'- aGCAcauacaGGAUGCUCaGCGcauGCGCGAc -3'
miRNA:   3'- gCGUuca---CCUACGAGaCGCu--CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 32007 0.68 0.767336
Target:  5'- aCGCGGgcGUGGAgcgcgaaGCUCcgGCGGGgCGCGGg -3'
miRNA:   3'- -GCGUU--CACCUa------CGAGa-CGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 119026 0.68 0.757721
Target:  5'- cCGCAGGUGGG-GCgcacgCUGUGGGaaGCGGu -3'
miRNA:   3'- -GCGUUCACCUaCGa----GACGCUCg-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 34136 0.68 0.747993
Target:  5'- cCGC-GGUGGccGCcgCgGCGAGCGCGc -3'
miRNA:   3'- -GCGuUCACCuaCGa-GaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 85859 0.68 0.747993
Target:  5'- aGCGAGUcGcgGCUCcGCGcggcgagcAGCGCGAg -3'
miRNA:   3'- gCGUUCAcCuaCGAGaCGC--------UCGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.