miRNA display CGI


Results 101 - 120 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 641 0.67 0.718594
Target:  5'- cCGCGGCCG-CacGGcccacacuaCACCCGUGCa -3'
miRNA:   3'- -GCGCCGGUaGaaCCuag------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 77940 0.67 0.737993
Target:  5'- gGCGGCCGg---GGcGUCCugCCguaucaucGCGCg -3'
miRNA:   3'- gCGCCGGUagaaCC-UAGGugGG--------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 106386 0.67 0.737993
Target:  5'- gGCGcGCCAgCUgcaGGUCCggGCCCGCGa -3'
miRNA:   3'- gCGC-CGGUaGAac-CUAGG--UGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 53957 0.67 0.744702
Target:  5'- gGCGGCCGccUCUgugcucGAcgcgcaccacgucuUCCGCCCgGCGCc -3'
miRNA:   3'- gCGCCGGU--AGAac----CU--------------AGGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 134038 0.67 0.747563
Target:  5'- --aGGCCG-CggcGGcgCCGCCCGCGg -3'
miRNA:   3'- gcgCCGGUaGaa-CCuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 32526 0.67 0.747563
Target:  5'- aCGCGGCUGUC--GGAggCgAUgCGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaaCCUa-GgUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 37813 0.67 0.718594
Target:  5'- aCGCGGCCGggcgGGcgCgACgCCGaCGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCuaGgUG-GGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 69623 0.67 0.718594
Target:  5'- gCGCGGCCg----GGcggCCGCaCUGCGCg -3'
miRNA:   3'- -GCGCCGGuagaaCCua-GGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 31225 0.67 0.747563
Target:  5'- --aGGCCG-CggcGGcgCCGCCCGCGg -3'
miRNA:   3'- gcgCCGGUaGaa-CCuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 59215 0.67 0.747563
Target:  5'- gGCGGCgCA-CggcGGcgCCACCgCGUGCu -3'
miRNA:   3'- gCGCCG-GUaGaa-CCuaGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 55689 0.67 0.728334
Target:  5'- gGCGGCCGg---GGAaa-ACUCGCGCu -3'
miRNA:   3'- gCGCCGGUagaaCCUaggUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 2789 0.67 0.747563
Target:  5'- gGCGGCC-UCcaGGG-CCGCgaGCGCg -3'
miRNA:   3'- gCGCCGGuAGaaCCUaGGUGggCGCG- -5'
6365 5' -58.6 NC_001847.1 + 5467 0.67 0.747563
Target:  5'- gGCGGCCgcGUCUcuc-UCCuuucCCCGCGCc -3'
miRNA:   3'- gCGCCGG--UAGAaccuAGGu---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 57872 0.67 0.747563
Target:  5'- uCGCcGCCGUCgcacgagGGuGUCgcccgccagCGCCCGCGCg -3'
miRNA:   3'- -GCGcCGGUAGaa-----CC-UAG---------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39880 0.67 0.747563
Target:  5'- aCGCGGCCc----GGGUCCAggCCGgGCg -3'
miRNA:   3'- -GCGCCGGuagaaCCUAGGUg-GGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 68937 0.67 0.753258
Target:  5'- gGCGGCCGcgggCUgcgccuccagccaGGcGUCCagcgcgGCCCGCGCg -3'
miRNA:   3'- gCGCCGGUa---GAa------------CC-UAGG------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 6300 0.67 0.757035
Target:  5'- gCGCGGCauuuaGUUUUGGugguuggCCcuuuuugugcgcGCCUGCGCg -3'
miRNA:   3'- -GCGCCGg----UAGAACCua-----GG------------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 4170 0.67 0.718594
Target:  5'- aGCgGGCCuuGUUUUGGG-CCGCgcgcccgugggCCGCGCg -3'
miRNA:   3'- gCG-CCGG--UAGAACCUaGGUG-----------GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 77046 0.67 0.757035
Target:  5'- aCGuCGGCCAUCggaagcugcUGGuacUCCGgCgGCGCu -3'
miRNA:   3'- -GC-GCCGGUAGa--------ACCu--AGGUgGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 64133 0.67 0.718594
Target:  5'- gCGCGGCCGcCguacUGGAcaugCgGCCCGCcauGCa -3'
miRNA:   3'- -GCGCCGGUaGa---ACCUa---GgUGGGCG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.