miRNA display CGI


Results 121 - 140 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 41854 0.67 0.72542
Target:  5'- gCGCGGCCugcgcgccgccgacAUCgcggcGcGAUaCgGCCCGCGCg -3'
miRNA:   3'- -GCGCCGG--------------UAGaa---C-CUA-GgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 101635 0.67 0.704839
Target:  5'- cCGCGGCgG-CgcccgccgCCGCCCGCGCc -3'
miRNA:   3'- -GCGCCGgUaGaaccua--GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 1193 0.67 0.708782
Target:  5'- cCGCGGCCGgcagCUcgucgGGcgCCAgcUCCaGCGCg -3'
miRNA:   3'- -GCGCCGGUa---GAa----CCuaGGU--GGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 12971 0.67 0.708782
Target:  5'- gGUGGCCcgGUCgcUGGuucccucUCCucguCCCGCGCg -3'
miRNA:   3'- gCGCCGG--UAGa-ACCu------AGGu---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 31450 0.67 0.708782
Target:  5'- gGCGGCCccggCgcgGGccgCCGCCgCGCGUg -3'
miRNA:   3'- gCGCCGGua--Gaa-CCua-GGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 70134 0.67 0.708782
Target:  5'- uCGC-GCCG-CUUGcGGUCCGCUCGCa- -3'
miRNA:   3'- -GCGcCGGUaGAAC-CUAGGUGGGCGcg -5'
6365 5' -58.6 NC_001847.1 + 101928 0.67 0.708782
Target:  5'- gCGCGGCgCcaagccGAgCCACCCGCGCc -3'
miRNA:   3'- -GCGCCG-GuagaacCUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 55689 0.67 0.728334
Target:  5'- gGCGGCCGg---GGAaa-ACUCGCGCu -3'
miRNA:   3'- gCGCCGGUagaaCCUaggUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 30606 0.67 0.737993
Target:  5'- aGCGGCCcc---GGggCCG-CCGCGCa -3'
miRNA:   3'- gCGCCGGuagaaCCuaGGUgGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 77940 0.67 0.737993
Target:  5'- gGCGGCCGg---GGcGUCCugCCguaucaucGCGCg -3'
miRNA:   3'- gCGCCGGUagaaCC-UAGGugGG--------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 109113 0.67 0.757035
Target:  5'- gCGCGGCauuuaGUUUUGGugguuggCCcuuuuugugcgcGCCUGCGCg -3'
miRNA:   3'- -GCGCCGg----UAGAACCua-----GG------------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 63188 0.67 0.757035
Target:  5'- uCGCGcGCCA---UGGccgaGCCCGCGCg -3'
miRNA:   3'- -GCGC-CGGUagaACCuaggUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 115580 0.67 0.747563
Target:  5'- cCGCGGCgAUCgcgGGcGUCgAUCgCGUGCg -3'
miRNA:   3'- -GCGCCGgUAGaa-CC-UAGgUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 32212 0.67 0.747563
Target:  5'- cCGCGGCC---UUGGAcgCCGuCCagGCGCa -3'
miRNA:   3'- -GCGCCGGuagAACCUa-GGU-GGg-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 108280 0.67 0.747563
Target:  5'- gGCGGCCgcGUCUcuc-UCCuuucCCCGCGCc -3'
miRNA:   3'- gCGCCGG--UAGAaccuAGGu---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 105602 0.67 0.747563
Target:  5'- gGCGGCC-UCcaGGG-CCGCgaGCGCg -3'
miRNA:   3'- gCGCCGGuAGaaCCUaGGUGggCGCG- -5'
6365 5' -58.6 NC_001847.1 + 34754 0.67 0.747563
Target:  5'- aCGCGGCCGagcUGGcgCgGCUgCGCGCc -3'
miRNA:   3'- -GCGCCGGUagaACCuaGgUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 32526 0.67 0.747563
Target:  5'- aCGCGGCUGUC--GGAggCgAUgCGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaaCCUa-GgUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 53957 0.67 0.744702
Target:  5'- gGCGGCCGccUCUgugcucGAcgcgcaccacgucuUCCGCCCgGCGCc -3'
miRNA:   3'- gCGCCGGU--AGAac----CU--------------AGGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 106386 0.67 0.737993
Target:  5'- gGCGcGCCAgCUgcaGGUCCggGCCCGCGa -3'
miRNA:   3'- gCGC-CGGUaGAac-CUAGG--UGGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.