miRNA display CGI


Results 101 - 120 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 11898 0.7 0.558639
Target:  5'- uGCGGCCg----GGGUCCGCgCUgGCGCg -3'
miRNA:   3'- gCGCCGGuagaaCCUAGGUG-GG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 30154 0.7 0.578513
Target:  5'- gCGCGGCUcgC--GGA-CCACCCGCu- -3'
miRNA:   3'- -GCGCCGGuaGaaCCUaGGUGGGCGcg -5'
6365 5' -58.6 NC_001847.1 + 94962 0.7 0.529212
Target:  5'- gGCGGCCGU------UCCGCCgCGCGCa -3'
miRNA:   3'- gCGCCGGUAgaaccuAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 105492 0.7 0.548773
Target:  5'- -uCGGacCCGUCcuccGGGUCCGCCCGCGg -3'
miRNA:   3'- gcGCC--GGUAGaa--CCUAGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 105788 0.7 0.569549
Target:  5'- cCGCGGUCGccgCUguuuucaacggCCGCCCGCGCa -3'
miRNA:   3'- -GCGCCGGUa--GAaccua------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 3997 0.69 0.588509
Target:  5'- gCGCGGCCccgCggGGcgCCggGCCCgGCGCc -3'
miRNA:   3'- -GCGCCGGua-GaaCCuaGG--UGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 44092 0.69 0.608587
Target:  5'- uGCGG-CGUCUgcgcccgCCGCCUGCGCg -3'
miRNA:   3'- gCGCCgGUAGAaccua--GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 21743 0.69 0.618654
Target:  5'- gCGcCGGCCcgCgcgcgcgggGGggCCGCCgGCGCc -3'
miRNA:   3'- -GC-GCCGGuaGaa-------CCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 25135 0.69 0.63982
Target:  5'- gGCGGCCGcggCUgccuaaagccgaagcGGAUgaaCCGCCCGgGCg -3'
miRNA:   3'- gCGCCGGUa--GAa--------------CCUA---GGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 29536 0.69 0.588509
Target:  5'- gGCGGCCGcgCUcgcggcccUGGAggCCGCCgGCGg -3'
miRNA:   3'- gCGCCGGUa-GA--------ACCUa-GGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 123083 0.69 0.598536
Target:  5'- cCGCGGCC-UC--GGcGUCCGCagCGCGCa -3'
miRNA:   3'- -GCGCCGGuAGaaCC-UAGGUGg-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 904 0.69 0.608587
Target:  5'- cCGCGGCCGcc--GGccgCCGCCCGCcgGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GGUGGGCG--CG- -5'
6365 5' -58.6 NC_001847.1 + 3770 0.69 0.628732
Target:  5'- --aGGCCcUCgcGGGUgUCGCCCGCGCc -3'
miRNA:   3'- gcgCCGGuAGaaCCUA-GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 81245 0.69 0.586507
Target:  5'- gCGgGGCCGUCgcgaggacgggGGGcCCGCCCGCc- -3'
miRNA:   3'- -GCgCCGGUAGaa---------CCUaGGUGGGCGcg -5'
6365 5' -58.6 NC_001847.1 + 604 0.69 0.618654
Target:  5'- cCGCGGCCGcUCcgcagcgGcGcgCgGCCCGCGCc -3'
miRNA:   3'- -GCGCCGGU-AGaa-----C-CuaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 50974 0.69 0.618654
Target:  5'- gGCGGCCgcGUCUaGGGcuacgaggUCC-CCgGCGCg -3'
miRNA:   3'- gCGCCGG--UAGAaCCU--------AGGuGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 102559 0.69 0.614626
Target:  5'- gGCGGCCGcgacuaggcgcagCUUGGcGUCCGCCaggucgcccaGCGCc -3'
miRNA:   3'- gCGCCGGUa------------GAACC-UAGGUGGg---------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 27702 0.69 0.608587
Target:  5'- gCGCGagcGCCGgc--GGG-CCGCCCGCGCc -3'
miRNA:   3'- -GCGC---CGGUagaaCCUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 71885 0.69 0.607581
Target:  5'- gCGCGGCCcguuguuGUCUU---UCCcaGCCCGUGCg -3'
miRNA:   3'- -GCGCCGG-------UAGAAccuAGG--UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 46567 0.69 0.638812
Target:  5'- gCGCGGCCGUUacaucUCuCGCgCCGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaaccuAG-GUG-GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.