miRNA display CGI


Results 81 - 100 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 3220 0.7 0.538962
Target:  5'- gCGCaGCCG-CUcGcGcgCCGCCCGCGCc -3'
miRNA:   3'- -GCGcCGGUaGAaC-CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 69505 0.7 0.538962
Target:  5'- aCGCGGCCGUUggcGGcgCagccaaGCCCuGCGCc -3'
miRNA:   3'- -GCGCCGGUAGaa-CCuaGg-----UGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 82136 0.7 0.538962
Target:  5'- aGCGGCCGccgCUgucGGcUCCgccauGCCUGCGCg -3'
miRNA:   3'- gCGCCGGUa--GAa--CCuAGG-----UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 2679 0.7 0.548773
Target:  5'- -uCGGacCCGUCcuccGGGUCCGCCCGCGg -3'
miRNA:   3'- gcGCC--GGUAGaa--CCUAGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 116137 0.7 0.548773
Target:  5'- gCGaagaGGCCGag--GGcgCCGCCCGUGCg -3'
miRNA:   3'- -GCg---CCGGUagaaCCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 92026 0.7 0.548773
Target:  5'- cCGC-GCCGUCUgcgGGcaCCGCCgGCGCc -3'
miRNA:   3'- -GCGcCGGUAGAa--CCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 94163 0.7 0.548773
Target:  5'- uCGCGGCgG-CUgcUGGGcgcggCCGCCuCGCGCg -3'
miRNA:   3'- -GCGCCGgUaGA--ACCUa----GGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 105492 0.7 0.548773
Target:  5'- -uCGGacCCGUCcuccGGGUCCGCCCGCGg -3'
miRNA:   3'- gcGCC--GGUAGaa--CCUAGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 29427 0.7 0.548773
Target:  5'- uGCGcGCCAgcgagcgCUggggcgUGGcgCCGCCCGCGg -3'
miRNA:   3'- gCGC-CGGUa------GA------ACCuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 4914 0.7 0.548773
Target:  5'- aCGCGGUCGUUagGGccgCCGcgcuuCCCGCGCc -3'
miRNA:   3'- -GCGCCGGUAGaaCCua-GGU-----GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 102896 0.7 0.555674
Target:  5'- cCG-GGCCcgCUcugggcuccgccccUGGGUCCGgcgcCCCGCGCc -3'
miRNA:   3'- -GCgCCGGuaGA--------------ACCUAGGU----GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 83 0.7 0.555674
Target:  5'- cCG-GGCCcgCUcugggcuccgccccUGGGUCCGgcgcCCCGCGCc -3'
miRNA:   3'- -GCgCCGGuaGA--------------ACCUAGGU----GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 49248 0.7 0.55765
Target:  5'- aCGCGGCUcgCcUGGA-CCucgacaaGCUCGCGCu -3'
miRNA:   3'- -GCGCCGGuaGaACCUaGG-------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 11898 0.7 0.558639
Target:  5'- uGCGGCCg----GGGUCCGCgCUgGCGCg -3'
miRNA:   3'- gCGCCGGuagaaCCUAGGUG-GG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 101030 0.7 0.558639
Target:  5'- cCGCGGCCg----GGGUCCcaAUuuGCGCa -3'
miRNA:   3'- -GCGCCGGuagaaCCUAGG--UGggCGCG- -5'
6365 5' -58.6 NC_001847.1 + 100351 0.7 0.568555
Target:  5'- aGCGGCCGc---GGGUCgUAgCCGCGCg -3'
miRNA:   3'- gCGCCGGUagaaCCUAG-GUgGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 78591 0.7 0.568555
Target:  5'- aCGCGGCCGcgCUcccUGGAgcugCCGCCgCG-GCa -3'
miRNA:   3'- -GCGCCGGUa-GA---ACCUa---GGUGG-GCgCG- -5'
6365 5' -58.6 NC_001847.1 + 105788 0.7 0.569549
Target:  5'- cCGCGGUCGccgCUguuuucaacggCCGCCCGCGCa -3'
miRNA:   3'- -GCGCCGGUa--GAaccua------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 30154 0.7 0.578513
Target:  5'- gCGCGGCUcgC--GGA-CCACCCGCu- -3'
miRNA:   3'- -GCGCCGGuaGaaCCUaGGUGGGCGcg -5'
6365 5' -58.6 NC_001847.1 + 41406 0.7 0.578513
Target:  5'- gCGCGGCCuccagCUgccGGAUCCGCuuGaCGa -3'
miRNA:   3'- -GCGCCGGua---GAa--CCUAGGUGggC-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.