miRNA display CGI


Results 101 - 120 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 18444 0.7 0.578513
Target:  5'- cCGCGGCCAgccgUGcGGUgCCgcGCCCGCaGCg -3'
miRNA:   3'- -GCGCCGGUaga-AC-CUA-GG--UGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 132967 0.7 0.578513
Target:  5'- gCGCGGCUcgC--GGA-CCACCCGCu- -3'
miRNA:   3'- -GCGCCGGuaGaaCCUaGGUGGGCGcg -5'
6365 5' -58.6 NC_001847.1 + 57935 0.7 0.578513
Target:  5'- aCGCGGCCAaacUGGAgCagGCCCGCGa -3'
miRNA:   3'- -GCGCCGGUagaACCUaGg-UGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 61383 0.7 0.578513
Target:  5'- aGCGGCCcgCgccg--CCGCCCgGCGCu -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 100751 0.7 0.578513
Target:  5'- uCGgGGCCg----GGGUCCAggucgcCCCGCGCc -3'
miRNA:   3'- -GCgCCGGuagaaCCUAGGU------GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 81245 0.69 0.586507
Target:  5'- gCGgGGCCGUCgcgaggacgggGGGcCCGCCCGCc- -3'
miRNA:   3'- -GCgCCGGUAGaa---------CCUaGGUGGGCGcg -5'
6365 5' -58.6 NC_001847.1 + 106810 0.69 0.588509
Target:  5'- gCGCGGCCccgCggGGcgCCggGCCCgGCGCc -3'
miRNA:   3'- -GCGCCGGua-GaaCCuaGG--UGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 15559 0.69 0.588509
Target:  5'- gCGCGGCCGUC--GGG-CCGCggCCGcCGCu -3'
miRNA:   3'- -GCGCCGGUAGaaCCUaGGUG--GGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 3997 0.69 0.588509
Target:  5'- gCGCGGCCccgCggGGcgCCggGCCCgGCGCc -3'
miRNA:   3'- -GCGCCGGua-GaaCCuaGG--UGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 29536 0.69 0.588509
Target:  5'- gGCGGCCGcgCUcgcggcccUGGAggCCGCCgGCGg -3'
miRNA:   3'- gCGCCGGUa-GA--------ACCUa-GGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 132349 0.69 0.588509
Target:  5'- gGCGGCCGcgCUcgcggcccUGGAggCCGCCgGCGg -3'
miRNA:   3'- gCGCCGGUa-GA--------ACCUa-GGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 32339 0.69 0.588509
Target:  5'- gCGCGGCgCGgaggGGGcCCAgccCCCGCGCg -3'
miRNA:   3'- -GCGCCG-GUagaaCCUaGGU---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 119888 0.69 0.588509
Target:  5'- uGCGGCgAUCgcgugcgUGGccgccgccgCCGCCgGCGCg -3'
miRNA:   3'- gCGCCGgUAGa------ACCua-------GGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 27933 0.69 0.588509
Target:  5'- gGCGGCCGUCUcGaGuUCCuCCuCGCGUc -3'
miRNA:   3'- gCGCCGGUAGAaC-CuAGGuGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 123083 0.69 0.598536
Target:  5'- cCGCGGCC-UC--GGcGUCCGCagCGCGCa -3'
miRNA:   3'- -GCGCCGGuAGaaCC-UAGGUGg-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 61951 0.69 0.598536
Target:  5'- gCGCGGCCcgCgcGGGccgacUCCGCcgCCGCGUc -3'
miRNA:   3'- -GCGCCGGuaGaaCCU-----AGGUG--GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 71885 0.69 0.607581
Target:  5'- gCGCGGCCcguuguuGUCUU---UCCcaGCCCGUGCg -3'
miRNA:   3'- -GCGCCGG-------UAGAAccuAGG--UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 44092 0.69 0.608587
Target:  5'- uGCGG-CGUCUgcgcccgCCGCCUGCGCg -3'
miRNA:   3'- gCGCCgGUAGAaccua--GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 904 0.69 0.608587
Target:  5'- cCGCGGCCGcc--GGccgCCGCCCGCcgGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GGUGGGCG--CG- -5'
6365 5' -58.6 NC_001847.1 + 27702 0.69 0.608587
Target:  5'- gCGCGagcGCCGgc--GGG-CCGCCCGCGCc -3'
miRNA:   3'- -GCGC---CGGUagaaCCUaGGUGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.