miRNA display CGI


Results 121 - 140 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 27702 0.69 0.608587
Target:  5'- gCGCGagcGCCGgc--GGG-CCGCCCGCGCc -3'
miRNA:   3'- -GCGC---CGGUagaaCCUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 69369 0.69 0.608587
Target:  5'- gCGCGGCgGUCUuugcggcggUGGcgCUGCCgGCGg -3'
miRNA:   3'- -GCGCCGgUAGA---------ACCuaGGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 130515 0.69 0.608587
Target:  5'- gCGCGagcGCCGgc--GGG-CCGCCCGCGCc -3'
miRNA:   3'- -GCGC---CGGUagaaCCUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 103717 0.69 0.608587
Target:  5'- cCGCGGCCGcc--GGccgCCGCCCGCcgGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GGUGGGCG--CG- -5'
6365 5' -58.6 NC_001847.1 + 68465 0.69 0.608587
Target:  5'- cCGCGGCCGg---GGccCCG-CCGCGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCuaGGUgGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 16469 0.69 0.612612
Target:  5'- cCGCGGCgCAgagcgcggacaccucUCUUGcg-CCuCCCGCGCg -3'
miRNA:   3'- -GCGCCG-GU---------------AGAACcuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 102559 0.69 0.614626
Target:  5'- gGCGGCCGcgacuaggcgcagCUUGGcGUCCGCCaggucgcccaGCGCc -3'
miRNA:   3'- gCGCCGGUa------------GAACC-UAGGUGGg---------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 21743 0.69 0.618654
Target:  5'- gCGcCGGCCcgCgcgcgcgggGGggCCGCCgGCGCc -3'
miRNA:   3'- -GC-GCCGGuaGaa-------CCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 125629 0.69 0.618654
Target:  5'- aGCGcGCCGcccgcucggCUcGGGUCCGCUCGuCGCg -3'
miRNA:   3'- gCGC-CGGUa--------GAaCCUAGGUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 50974 0.69 0.618654
Target:  5'- gGCGGCCgcGUCUaGGGcuacgaggUCC-CCgGCGCg -3'
miRNA:   3'- gCGCCGG--UAGAaCCU--------AGGuGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 604 0.69 0.618654
Target:  5'- cCGCGGCCGcUCcgcagcgGcGcgCgGCCCGCGCc -3'
miRNA:   3'- -GCGCCGGU-AGaa-----C-CuaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 124556 0.69 0.618654
Target:  5'- gCGcCGGCCcgCgcgcgcgggGGggCCGCCgGCGCc -3'
miRNA:   3'- -GC-GCCGGuaGaa-------CCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 105798 0.69 0.618654
Target:  5'- cCGgGGCCG-CgcgcUGGAgCCGCgCGCGCu -3'
miRNA:   3'- -GCgCCGGUaGa---ACCUaGGUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 103417 0.69 0.618654
Target:  5'- cCGCGGCCGcUCcgcagcgGcGcgCgGCCCGCGCc -3'
miRNA:   3'- -GCGCCGGU-AGaa-----C-CuaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 32117 0.69 0.625708
Target:  5'- uGCGGCCcgCccgccgccggcgcugGGcgCCgccgcGCCCGCGCa -3'
miRNA:   3'- gCGCCGGuaGaa-------------CCuaGG-----UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 2559 0.69 0.628732
Target:  5'- gGCgGGCUGUCUUcGGcgCgggCGCCUGCGCg -3'
miRNA:   3'- gCG-CCGGUAGAA-CCuaG---GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 61689 0.69 0.628732
Target:  5'- uGCGcCCAUCgcGGuaGUCCAUgCCGCGCg -3'
miRNA:   3'- gCGCcGGUAGaaCC--UAGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 106583 0.69 0.628732
Target:  5'- --aGGCCcUCgcGGGUgUCGCCCGCGCc -3'
miRNA:   3'- gcgCCGGuAGaaCCUA-GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 3770 0.69 0.628732
Target:  5'- --aGGCCcUCgcGGGUgUCGCCCGCGCc -3'
miRNA:   3'- gcgCCGGuAGaaCCUA-GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 126712 0.69 0.628732
Target:  5'- -aCGGCCGUCUUGG---CACCCGgGg -3'
miRNA:   3'- gcGCCGGUAGAACCuagGUGGGCgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.