miRNA display CGI


Results 81 - 100 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 66643 0.66 0.772886
Target:  5'- gGgGGCgCGUUUgUGGAcugccuggcgcgcuUgCGCCCGCGCg -3'
miRNA:   3'- gCgCCG-GUAGA-ACCU--------------AgGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 3998 0.66 0.770113
Target:  5'- gCGCGGCCAagUUaacaGUCCGCCCcccgagcagcauaccGCGCc -3'
miRNA:   3'- -GCGCCGGUagAAcc--UAGGUGGG---------------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 101823 0.66 0.767329
Target:  5'- cCGCgaGGCCGUCUUcGGugugcgccguugcgCCugCCGCGa -3'
miRNA:   3'- -GCG--CCGGUAGAA-CCua------------GGugGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 41793 0.66 0.766399
Target:  5'- -cUGGCCGUUgaacUGGAagaCGCaCCGCGCg -3'
miRNA:   3'- gcGCCGGUAGa---ACCUag-GUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 110949 0.66 0.766399
Target:  5'- -cUGGCCGUCaUGG--CCACCaGCGCc -3'
miRNA:   3'- gcGCCGGUAGaACCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 112976 0.66 0.766399
Target:  5'- uCGCGGCgCgAUCgu--GUCCACCaCGUGCu -3'
miRNA:   3'- -GCGCCG-G-UAGaaccUAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 122670 0.66 0.766399
Target:  5'- cCGCcGCCA-CgcgGGAagccgcggaggcUCCGCCgCGCGCg -3'
miRNA:   3'- -GCGcCGGUaGaa-CCU------------AGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 70052 0.66 0.766399
Target:  5'- gCGCGGCCuUCUc-GAUcgCCGCCgaaGCGCu -3'
miRNA:   3'- -GCGCCGGuAGAacCUA--GGUGGg--CGCG- -5'
6365 5' -58.6 NC_001847.1 + 14734 0.66 0.766399
Target:  5'- aCGCGGUCGUCUgcagcauaacGAagcagUCGCCCGCGg -3'
miRNA:   3'- -GCGCCGGUAGAac--------CUa----GGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 95297 0.66 0.766399
Target:  5'- uGCGGCCG-C-UGGcgCCuCCagGCGCg -3'
miRNA:   3'- gCGCCGGUaGaACCuaGGuGGg-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 45595 0.66 0.766399
Target:  5'- aCGCGGCCcgCg-GGccaAUCUgACCCGuCGCu -3'
miRNA:   3'- -GCGCCGGuaGaaCC---UAGG-UGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 67514 0.66 0.766399
Target:  5'- cCGCcGCCGUCUccgccGGcgCCGCCUuuuuccgcagGCGCg -3'
miRNA:   3'- -GCGcCGGUAGAa----CCuaGGUGGG----------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 78503 0.66 0.766399
Target:  5'- gGUGGCCAccCUcGGccggCUGCUCGCGCg -3'
miRNA:   3'- gCGCCGGUa-GAaCCua--GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 7016 0.66 0.766399
Target:  5'- aGCGGCCG-Cgc--AUCCGCCaGCGCc -3'
miRNA:   3'- gCGCCGGUaGaaccUAGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 81392 0.66 0.766399
Target:  5'- cCGCcucgGGCCGcc--GGAUCCGCgcuacgCCGCGCg -3'
miRNA:   3'- -GCG----CCGGUagaaCCUAGGUG------GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 53719 0.66 0.766399
Target:  5'- gGCGGCUcgCggggcGGAUCgGCgCGCGg -3'
miRNA:   3'- gCGCCGGuaGaa---CCUAGgUGgGCGCg -5'
6365 5' -58.6 NC_001847.1 + 104563 0.67 0.760794
Target:  5'- aCGCGGCgGUCcuccUGGAccucgucccagacgCCGCggagCCGCGCg -3'
miRNA:   3'- -GCGCCGgUAGa---ACCUa-------------GGUG----GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 40914 0.67 0.760794
Target:  5'- -aCGGCCcgCgcGGGcgccccgccgcgagcUCCGCCgCGCGCa -3'
miRNA:   3'- gcGCCGGuaGaaCCU---------------AGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 125073 0.67 0.757035
Target:  5'- gCGCGGCgg----GGcgCUggGCCCGCGCg -3'
miRNA:   3'- -GCGCCGguagaaCCuaGG--UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39380 0.67 0.757035
Target:  5'- cCGCGacGCCGUCggGGAgccggcgCCGgCCGgGCu -3'
miRNA:   3'- -GCGC--CGGUAGaaCCUa------GGUgGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.