Results 101 - 120 of 391 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6365 | 5' | -58.6 | NC_001847.1 | + | 39380 | 0.67 | 0.757035 |
Target: 5'- cCGCGacGCCGUCggGGAgccggcgCCGgCCGgGCu -3' miRNA: 3'- -GCGC--CGGUAGaaCCUa------GGUgGGCgCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 63188 | 0.67 | 0.757035 |
Target: 5'- uCGCGcGCCA---UGGccgaGCCCGCGCg -3' miRNA: 3'- -GCGC-CGGUagaACCuaggUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 125073 | 0.67 | 0.757035 |
Target: 5'- gCGCGGCgg----GGcgCUggGCCCGCGCg -3' miRNA: 3'- -GCGCCGguagaaCCuaGG--UGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 77046 | 0.67 | 0.757035 |
Target: 5'- aCGuCGGCCAUCggaagcugcUGGuacUCCGgCgGCGCu -3' miRNA: 3'- -GC-GCCGGUAGa--------ACCu--AGGUgGgCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 6300 | 0.67 | 0.757035 |
Target: 5'- gCGCGGCauuuaGUUUUGGugguuggCCcuuuuugugcgcGCCUGCGCg -3' miRNA: 3'- -GCGCCGg----UAGAACCua-----GG------------UGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 64786 | 0.67 | 0.757035 |
Target: 5'- gGCGGCCuuuUCcUGGAgCUACUugcaaaCGCGCc -3' miRNA: 3'- gCGCCGGu--AGaACCUaGGUGG------GCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 109113 | 0.67 | 0.757035 |
Target: 5'- gCGCGGCauuuaGUUUUGGugguuggCCcuuuuugugcgcGCCUGCGCg -3' miRNA: 3'- -GCGCCGg----UAGAACCua-----GG------------UGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 68937 | 0.67 | 0.753258 |
Target: 5'- gGCGGCCGcgggCUgcgccuccagccaGGcGUCCagcgcgGCCCGCGCg -3' miRNA: 3'- gCGCCGGUa---GAa------------CC-UAGG------UGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 134038 | 0.67 | 0.747563 |
Target: 5'- --aGGCCG-CggcGGcgCCGCCCGCGg -3' miRNA: 3'- gcgCCGGUaGaa-CCuaGGUGGGCGCg -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 79945 | 0.67 | 0.747563 |
Target: 5'- uCGCGGgCAUCagaaucaucuuUUGGAaaagcUCCAgcgcgcCCCGCGUc -3' miRNA: 3'- -GCGCCgGUAG-----------AACCU-----AGGU------GGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 34754 | 0.67 | 0.747563 |
Target: 5'- aCGCGGCCGagcUGGcgCgGCUgCGCGCc -3' miRNA: 3'- -GCGCCGGUagaACCuaGgUGG-GCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 105602 | 0.67 | 0.747563 |
Target: 5'- gGCGGCC-UCcaGGG-CCGCgaGCGCg -3' miRNA: 3'- gCGCCGGuAGaaCCUaGGUGggCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 32212 | 0.67 | 0.747563 |
Target: 5'- cCGCGGCC---UUGGAcgCCGuCCagGCGCa -3' miRNA: 3'- -GCGCCGGuagAACCUa-GGU-GGg-CGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 2789 | 0.67 | 0.747563 |
Target: 5'- gGCGGCC-UCcaGGG-CCGCgaGCGCg -3' miRNA: 3'- gCGCCGGuAGaaCCUaGGUGggCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 31225 | 0.67 | 0.747563 |
Target: 5'- --aGGCCG-CggcGGcgCCGCCCGCGg -3' miRNA: 3'- gcgCCGGUaGaa-CCuaGGUGGGCGCg -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 59215 | 0.67 | 0.747563 |
Target: 5'- gGCGGCgCA-CggcGGcgCCACCgCGUGCu -3' miRNA: 3'- gCGCCG-GUaGaa-CCuaGGUGG-GCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 5467 | 0.67 | 0.747563 |
Target: 5'- gGCGGCCgcGUCUcuc-UCCuuucCCCGCGCc -3' miRNA: 3'- gCGCCGG--UAGAaccuAGGu---GGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 57872 | 0.67 | 0.747563 |
Target: 5'- uCGCcGCCGUCgcacgagGGuGUCgcccgccagCGCCCGCGCg -3' miRNA: 3'- -GCGcCGGUAGaa-----CC-UAG---------GUGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 102220 | 0.67 | 0.747563 |
Target: 5'- gCGCgGGUCGUCgggcgGGAcggcgUCCaggcGCUCGCGCg -3' miRNA: 3'- -GCG-CCGGUAGaa---CCU-----AGG----UGGGCGCG- -5' |
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6365 | 5' | -58.6 | NC_001847.1 | + | 108280 | 0.67 | 0.747563 |
Target: 5'- gGCGGCCgcGUCUcuc-UCCuuucCCCGCGCc -3' miRNA: 3'- gCGCCGG--UAGAaccuAGGu---GGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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