miRNA display CGI


Results 81 - 100 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 30075 0.66 0.802613
Target:  5'- cCGCGuGCCGccCggGGAcuaccacaCGCCCGCGCc -3'
miRNA:   3'- -GCGC-CGGUa-GaaCCUag------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 30154 0.7 0.578513
Target:  5'- gCGCGGCUcgC--GGA-CCACCCGCu- -3'
miRNA:   3'- -GCGCCGGuaGaaCCUaGGUGGGCGcg -5'
6365 5' -58.6 NC_001847.1 + 30401 0.67 0.718594
Target:  5'- gGCGGCCcgagUGGccgCCGCgCCGCGg -3'
miRNA:   3'- gCGCCGGuagaACCua-GGUG-GGCGCg -5'
6365 5' -58.6 NC_001847.1 + 30606 0.67 0.737993
Target:  5'- aGCGGCCcc---GGggCCG-CCGCGCa -3'
miRNA:   3'- gCGCCGGuagaaCCuaGGUgGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 30784 0.68 0.658949
Target:  5'- uCGCGGCgCGUCU----UCgGCCCGgGCg -3'
miRNA:   3'- -GCGCCG-GUAGAaccuAGgUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 31174 0.66 0.775648
Target:  5'- gCGCGGCCGcgCUgccGGAgCCGCgCGCcgagGCg -3'
miRNA:   3'- -GCGCCGGUa-GAa--CCUaGGUGgGCG----CG- -5'
6365 5' -58.6 NC_001847.1 + 31225 0.67 0.747563
Target:  5'- --aGGCCG-CggcGGcgCCGCCCGCGg -3'
miRNA:   3'- gcgCCGGUaGaa-CCuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 31326 0.67 0.728334
Target:  5'- gGCGGCCugg-UGGAgcgcgugccgCCGCCgGCGg -3'
miRNA:   3'- gCGCCGGuagaACCUa---------GGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 31450 0.67 0.708782
Target:  5'- gGCGGCCccggCgcgGGccgCCGCCgCGCGUg -3'
miRNA:   3'- gCGCCGGua--Gaa-CCua-GGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 31751 0.68 0.679003
Target:  5'- aGCGGCg--CgUGGucagcGUgCACCCGCGCg -3'
miRNA:   3'- gCGCCGguaGaACC-----UAgGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 32021 0.66 0.793763
Target:  5'- gGCGGCCcgCgcucgcgcggGGAagCC-CCCGCGa -3'
miRNA:   3'- gCGCCGGuaGaa--------CCUa-GGuGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 32117 0.69 0.625708
Target:  5'- uGCGGCCcgCccgccgccggcgcugGGcgCCgccgcGCCCGCGCa -3'
miRNA:   3'- gCGCCGGuaGaa-------------CCuaGG-----UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 32212 0.67 0.747563
Target:  5'- cCGCGGCC---UUGGAcgCCGuCCagGCGCa -3'
miRNA:   3'- -GCGCCGGuagAACCUa-GGU-GGg-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 32339 0.69 0.588509
Target:  5'- gCGCGGCgCGgaggGGGcCCAgccCCCGCGCg -3'
miRNA:   3'- -GCGCCG-GUagaaCCUaGGU---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 32491 0.66 0.811313
Target:  5'- uCGCGGCCGcUCccGGcgcgUCACCCcgagacGCGCg -3'
miRNA:   3'- -GCGCCGGU-AGaaCCua--GGUGGG------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 32526 0.67 0.747563
Target:  5'- aCGCGGCUGUC--GGAggCgAUgCGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaaCCUa-GgUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 33217 0.72 0.463054
Target:  5'- gGUGGCUcggCUUGGcgCCGCgCCGgGCg -3'
miRNA:   3'- gCGCCGGua-GAACCuaGGUG-GGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 33568 0.66 0.784772
Target:  5'- aCGCGGggggCGUC-UGGcgCgGCCCGgGCu -3'
miRNA:   3'- -GCGCCg---GUAGaACCuaGgUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 34228 0.67 0.737993
Target:  5'- cCGCGGCUAUU-----UCCACCCGaGCc -3'
miRNA:   3'- -GCGCCGGUAGaaccuAGGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 34613 0.67 0.708782
Target:  5'- gGCGGCgCGcCgaGGAagUCCggcGCCUGCGCg -3'
miRNA:   3'- gCGCCG-GUaGaaCCU--AGG---UGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.