miRNA display CGI


Results 101 - 120 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 34754 0.67 0.747563
Target:  5'- aCGCGGCCGagcUGGcgCgGCUgCGCGCc -3'
miRNA:   3'- -GCGCCGGUagaACCuaGgUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 35185 0.71 0.500373
Target:  5'- aCGCGGCCuUCgaGGAggaGCgCGCGCg -3'
miRNA:   3'- -GCGCCGGuAGaaCCUaggUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 36458 0.73 0.409969
Target:  5'- gCGCGGCUGUgUgagcgGGAccUgCACCUGCGCg -3'
miRNA:   3'- -GCGCCGGUAgAa----CCU--AgGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 36951 0.66 0.793763
Target:  5'- cCGCGGCCGUCgcacggCUGCCUagaggacuggGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaaccuaGGUGGG----------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 36965 0.74 0.360837
Target:  5'- uGCGGCCAgCgcgGGcgCCggcgagcggGCCCGCGCc -3'
miRNA:   3'- gCGCCGGUaGaa-CCuaGG---------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 37599 0.75 0.301965
Target:  5'- gGCGGCCGg---GGGcCgGCCCGCGCu -3'
miRNA:   3'- gCGCCGGUagaaCCUaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 37813 0.67 0.718594
Target:  5'- aCGCGGCCGggcgGGcgCgACgCCGaCGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCuaGgUG-GGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 38229 0.66 0.793763
Target:  5'- cCGCGcGCC-UCUacgcGGccgCCAguCCCGCGCg -3'
miRNA:   3'- -GCGC-CGGuAGAa---CCua-GGU--GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39380 0.67 0.757035
Target:  5'- cCGCGacGCCGUCggGGAgccggcgCCGgCCGgGCu -3'
miRNA:   3'- -GCGC--CGGUAGaaCCUa------GGUgGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 39387 0.68 0.668991
Target:  5'- aGCGGCCcgCgccg--CCcCCCGCGCc -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39414 0.68 0.668991
Target:  5'- aGCGGCCcgCgccg--CCcCCCGCGCc -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39441 0.68 0.668991
Target:  5'- aGCGGCCcgCgccg--CCcCCCGCGCc -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39468 0.68 0.668991
Target:  5'- aGCGGCCcgCgccg--CCcCCCGCGCc -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39495 0.68 0.668991
Target:  5'- aGCGGCCcgCgccg--CCcCCCGCGCc -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 39880 0.67 0.747563
Target:  5'- aCGCGGCCc----GGGUCCAggCCGgGCg -3'
miRNA:   3'- -GCGCCGGuagaaCCUAGGUg-GGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 40914 0.67 0.760794
Target:  5'- -aCGGCCcgCgcGGGcgccccgccgcgagcUCCGCCgCGCGCa -3'
miRNA:   3'- gcGCCGGuaGaaCCU---------------AGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 41406 0.7 0.578513
Target:  5'- gCGCGGCCuccagCUgccGGAUCCGCuuGaCGa -3'
miRNA:   3'- -GCGCCGGua---GAa--CCUAGGUGggC-GCg -5'
6365 5' -58.6 NC_001847.1 + 41627 0.73 0.393964
Target:  5'- cCGgGGCCGcCgggcgagugggugcGGAUCCACCCGaCGCg -3'
miRNA:   3'- -GCgCCGGUaGaa------------CCUAGGUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 41793 0.66 0.766399
Target:  5'- -cUGGCCGUUgaacUGGAagaCGCaCCGCGCg -3'
miRNA:   3'- gcGCCGGUAGa---ACCUag-GUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 41854 0.67 0.72542
Target:  5'- gCGCGGCCugcgcgccgccgacAUCgcggcGcGAUaCgGCCCGCGCg -3'
miRNA:   3'- -GCGCCGG--------------UAGaa---C-CUA-GgUGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.