miRNA display CGI


Results 121 - 140 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 42813 0.68 0.688978
Target:  5'- cCGUGGCCAUCgUGGuugCCGCCUuuGa -3'
miRNA:   3'- -GCGCCGGUAGaACCua-GGUGGGcgCg -5'
6365 5' -58.6 NC_001847.1 + 43370 0.68 0.662969
Target:  5'- cCGCGGCCAgcgccgccgacGGAg-CGCCCGCGg -3'
miRNA:   3'- -GCGCCGGUagaa-------CCUagGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 43541 0.68 0.698907
Target:  5'- uCGCGGCCAaCacGGcgCCGCgguUUGCGCg -3'
miRNA:   3'- -GCGCCGGUaGaaCCuaGGUG---GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 44092 0.69 0.608587
Target:  5'- uGCGG-CGUCUgcgcccgCCGCCUGCGCg -3'
miRNA:   3'- gCGCCgGUAGAaccua--GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 44760 0.71 0.481539
Target:  5'- cCG-GGCCuUCcUGGccUCCAUCCGCGCg -3'
miRNA:   3'- -GCgCCGGuAGaACCu-AGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 45595 0.66 0.766399
Target:  5'- aCGCGGCCcgCg-GGccaAUCUgACCCGuCGCu -3'
miRNA:   3'- -GCGCCGGuaGaaCC---UAGG-UGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 46209 0.66 0.784772
Target:  5'- gGCGGCCGcCgccGGG-CCGgCCGCGg -3'
miRNA:   3'- gCGCCGGUaGaa-CCUaGGUgGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 46567 0.69 0.638812
Target:  5'- gCGCGGCCGUUacaucUCuCGCgCCGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaaccuAG-GUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 47708 0.71 0.500373
Target:  5'- gGCGGCCG-CcgGGAacgccagcccgUCGCCCGCGCa -3'
miRNA:   3'- gCGCCGGUaGaaCCUa----------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 47733 0.76 0.275422
Target:  5'- gCGCGGCgGgCggGGccCCGCCCGCGCg -3'
miRNA:   3'- -GCGCCGgUaGaaCCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 48776 0.71 0.519527
Target:  5'- cCGCGGCCcgccgccucGUCUgcgGGcgCCucGCCgGCGCc -3'
miRNA:   3'- -GCGCCGG---------UAGAa--CCuaGG--UGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 49248 0.7 0.55765
Target:  5'- aCGCGGCUcgCcUGGA-CCucgacaaGCUCGCGCu -3'
miRNA:   3'- -GCGCCGGuaGaACCUaGG-------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 49888 0.71 0.490914
Target:  5'- cCGCGGCCAcCUacucgcgcaccUGGcgCCGCCgGcCGCc -3'
miRNA:   3'- -GCGCCGGUaGA-----------ACCuaGGUGGgC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 50056 0.72 0.453952
Target:  5'- gGCGGCCGc---GGGUCCGCgCGCGg -3'
miRNA:   3'- gCGCCGGUagaaCCUAGGUGgGCGCg -5'
6365 5' -58.6 NC_001847.1 + 50090 0.66 0.784772
Target:  5'- gCGCGGCCAa---GGcugCCGCgCCGgGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GGUG-GGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 50513 0.68 0.688978
Target:  5'- gCGCgGGCCAggaguUCgcgcUGGA-CCACCUgGCGCu -3'
miRNA:   3'- -GCG-CCGGU-----AGa---ACCUaGGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 50811 0.7 0.537984
Target:  5'- uGCGGCCGguacgguuuuacgggGGGgcgCUGCCCGCGCc -3'
miRNA:   3'- gCGCCGGUagaa-----------CCUa--GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 50974 0.69 0.618654
Target:  5'- gGCGGCCgcGUCUaGGGcuacgaggUCC-CCgGCGCg -3'
miRNA:   3'- gCGCCGG--UAGAaCCU--------AGGuGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 51281 0.66 0.802613
Target:  5'- cCGCGGCgCGcUCggGGAagUgGCCCGCGa -3'
miRNA:   3'- -GCGCCG-GU-AGaaCCUa-GgUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 51419 0.77 0.233511
Target:  5'- gGCGGCgCAgac-GGAgCCGCCCGCGCg -3'
miRNA:   3'- gCGCCG-GUagaaCCUaGGUGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.