miRNA display CGI


Results 141 - 160 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 51590 0.67 0.737031
Target:  5'- gGCaGCCGUCg-GGAgggcagugcUCCACCCcggggcgGCGCa -3'
miRNA:   3'- gCGcCGGUAGaaCCU---------AGGUGGG-------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 51699 0.66 0.775648
Target:  5'- uCGCGcGCCGUCgucgGGGUCgAa-CGCGUa -3'
miRNA:   3'- -GCGC-CGGUAGaa--CCUAGgUggGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 51761 0.66 0.793763
Target:  5'- aCGCGGUCugggugGGAUgCGgcgccagcucgcCCCGCGCg -3'
miRNA:   3'- -GCGCCGGuagaa-CCUAgGU------------GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 51966 0.68 0.662969
Target:  5'- cCGCGGCagugaugcacUGGGUgCGCCgGCGCa -3'
miRNA:   3'- -GCGCCGguaga-----ACCUAgGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 52392 0.67 0.712715
Target:  5'- aGaCGGCCGUCUacGGcgCCgugcuccaggcgcugGgCCCGCGCg -3'
miRNA:   3'- gC-GCCGGUAGAa-CCuaGG---------------U-GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 53429 0.66 0.775648
Target:  5'- gCGCGuGCCG-CU----UCCACCgGCGCg -3'
miRNA:   3'- -GCGC-CGGUaGAaccuAGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 53719 0.66 0.766399
Target:  5'- gGCGGCUcgCggggcGGAUCgGCgCGCGg -3'
miRNA:   3'- gCGCCGGuaGaa---CCUAGgUGgGCGCg -5'
6365 5' -58.6 NC_001847.1 + 53957 0.67 0.744702
Target:  5'- gGCGGCCGccUCUgugcucGAcgcgcaccacgucuUCCGCCCgGCGCc -3'
miRNA:   3'- gCGCCGGU--AGAac----CU--------------AGGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 54231 0.72 0.436046
Target:  5'- gGCGGCCAcggccgCUUGGG-CgGCCaCGCGUg -3'
miRNA:   3'- gCGCCGGUa-----GAACCUaGgUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 54274 0.68 0.668991
Target:  5'- aGCGGC--UCgaGGcgCuCAUCCGCGCg -3'
miRNA:   3'- gCGCCGguAGaaCCuaG-GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 54298 0.67 0.728334
Target:  5'- aCGCGcGCCGcCgcccGGAUCUGCCCccccaagucgcgGCGCg -3'
miRNA:   3'- -GCGC-CGGUaGaa--CCUAGGUGGG------------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 54593 0.69 0.638812
Target:  5'- gGCGGCg--CUggcGGcgCgCGCCCGCGCc -3'
miRNA:   3'- gCGCCGguaGAa--CCuaG-GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 55008 0.68 0.698907
Target:  5'- gGCGGCg--C-UGGAgUCCAUgCGCGCg -3'
miRNA:   3'- gCGCCGguaGaACCU-AGGUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 55173 0.69 0.635788
Target:  5'- aGCGGCUcgCcUGGcaauauAUCCgcgagcucguucugGCCCGCGCc -3'
miRNA:   3'- gCGCCGGuaGaACC------UAGG--------------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 55689 0.67 0.728334
Target:  5'- gGCGGCCGg---GGAaa-ACUCGCGCu -3'
miRNA:   3'- gCGCCGGUagaaCCUaggUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 55741 0.66 0.793763
Target:  5'- -aCGGUgGUCc-GGcUCgCGCCCGCGCg -3'
miRNA:   3'- gcGCCGgUAGaaCCuAG-GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 55933 0.68 0.648887
Target:  5'- cCGCGGCCggcGUCgc-GAgcccagaaugCgCACCCGCGCg -3'
miRNA:   3'- -GCGCCGG---UAGaacCUa---------G-GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 56878 0.68 0.679003
Target:  5'- gCGCGGCCAc---GGGcCCGCCgGCGa -3'
miRNA:   3'- -GCGCCGGUagaaCCUaGGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 57020 0.66 0.793763
Target:  5'- gCGCGcGCCcgCUuuUGG---CGCCCGCGUc -3'
miRNA:   3'- -GCGC-CGGuaGA--ACCuagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 57085 0.75 0.301965
Target:  5'- gGCGGCCAgcgCUgcgcUGGAccgccgcgCCGCCgCGCGCa -3'
miRNA:   3'- gCGCCGGUa--GA----ACCUa-------GGUGG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.