miRNA display CGI


Results 61 - 80 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 113604 0.73 0.384884
Target:  5'- aCGCGauguGCCAgCUUGGGcgcgUUgGCCCGCGCg -3'
miRNA:   3'- -GCGC----CGGUaGAACCU----AGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 112976 0.66 0.766399
Target:  5'- uCGCGGCgCgAUCgu--GUCCACCaCGUGCu -3'
miRNA:   3'- -GCGCCG-G-UAGaaccUAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 110949 0.66 0.766399
Target:  5'- -cUGGCCGUCaUGG--CCACCaGCGCc -3'
miRNA:   3'- gcGCCGGUAGaACCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 109113 0.67 0.757035
Target:  5'- gCGCGGCauuuaGUUUUGGugguuggCCcuuuuugugcgcGCCUGCGCg -3'
miRNA:   3'- -GCGCCGg----UAGAACCua-----GG------------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 108748 0.67 0.728334
Target:  5'- gGCGGCgGaCgacGGGcCCGCCCGCuGCu -3'
miRNA:   3'- gCGCCGgUaGaa-CCUaGGUGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 108704 0.66 0.79108
Target:  5'- gCGCGGCCuaccgcugccccGUCUcgcggcugggcgacUGcGAcgcgacggcguUCCugCCGCGCu -3'
miRNA:   3'- -GCGCCGG------------UAGA--------------AC-CU-----------AGGugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 108654 0.66 0.793763
Target:  5'- aGUGGCCGgggCcgcGGAcgaguuUCCGcucCCCGCGCu -3'
miRNA:   3'- gCGCCGGUa--Gaa-CCU------AGGU---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 108280 0.67 0.747563
Target:  5'- gGCGGCCgcGUCUcuc-UCCuuucCCCGCGCc -3'
miRNA:   3'- gCGCCGG--UAGAaccuAGGu---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 108251 0.68 0.668991
Target:  5'- uGCaGGCCAU----GAUCCGCugCCGCGCg -3'
miRNA:   3'- gCG-CCGGUAgaacCUAGGUG--GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 106810 0.69 0.588509
Target:  5'- gCGCGGCCccgCggGGcgCCggGCCCgGCGCc -3'
miRNA:   3'- -GCGCCGGua-GaaCCuaGG--UGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 106583 0.69 0.628732
Target:  5'- --aGGCCcUCgcGGGUgUCGCCCGCGCc -3'
miRNA:   3'- gcgCCGGuAGaaCCUA-GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 106386 0.67 0.737993
Target:  5'- gGCGcGCCAgCUgcaGGUCCggGCCCGCGa -3'
miRNA:   3'- gCGC-CGGUaGAac-CUAGG--UGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 106287 0.66 0.802613
Target:  5'- gCGCGGCCA---UGGcGUCCccgACCgGCGg -3'
miRNA:   3'- -GCGCCGGUagaACC-UAGG---UGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 106033 0.7 0.538962
Target:  5'- gCGCaGCCG-CUcGcGcgCCGCCCGCGCc -3'
miRNA:   3'- -GCGcCGGUaGAaC-CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 105912 0.67 0.718594
Target:  5'- cCGCGGCCGgca-GGccgCgGCCCGcCGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GgUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 105831 0.68 0.658949
Target:  5'- uCGCGGCUcgCUUG--UCCGCggCCGCGg -3'
miRNA:   3'- -GCGCCGGuaGAACcuAGGUG--GGCGCg -5'
6365 5' -58.6 NC_001847.1 + 105798 0.69 0.618654
Target:  5'- cCGgGGCCG-CgcgcUGGAgCCGCgCGCGCu -3'
miRNA:   3'- -GCgCCGGUaGa---ACCUaGGUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 105788 0.7 0.569549
Target:  5'- cCGCGGUCGccgCUguuuucaacggCCGCCCGCGCa -3'
miRNA:   3'- -GCGCCGGUa--GAaccua------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 105641 0.68 0.668991
Target:  5'- uGCGGCCGaa---GcgCCGCCCGCGg -3'
miRNA:   3'- gCGCCGGUagaacCuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 105602 0.67 0.747563
Target:  5'- gGCGGCC-UCcaGGG-CCGCgaGCGCg -3'
miRNA:   3'- gCGCCGGuAGaaCCUaGGUGggCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.