miRNA display CGI


Results 81 - 100 of 391 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 105492 0.7 0.548773
Target:  5'- -uCGGacCCGUCcuccGGGUCCGCCCGCGg -3'
miRNA:   3'- gcGCC--GGUAGaa--CCUAGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 104749 0.76 0.250778
Target:  5'- gGCGGCCA-CUcGGG-CCGCCgGCGCu -3'
miRNA:   3'- gCGCCGGUaGAaCCUaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 104563 0.67 0.760794
Target:  5'- aCGCGGCgGUCcuccUGGAccucgucccagacgCCGCggagCCGCGCg -3'
miRNA:   3'- -GCGCCGgUAGa---ACCUa-------------GGUG----GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 104549 0.68 0.698907
Target:  5'- cCGCGGCCAgccgCgcgcagaGGuacUCCACCgCGcCGCg -3'
miRNA:   3'- -GCGCCGGUa---Gaa-----CCu--AGGUGG-GC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 104496 0.73 0.376751
Target:  5'- gCGCGGCCAguUCUcgGGGUCCA-CgGCGUc -3'
miRNA:   3'- -GCGCCGGU--AGAa-CCUAGGUgGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 104006 0.67 0.708782
Target:  5'- cCGCGGCCGgcagCUcgucgGGcgCCAgcUCCaGCGCg -3'
miRNA:   3'- -GCGCCGGUa---GAa----CCuaGGU--GGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 103984 0.66 0.793763
Target:  5'- gCGCGG-CGUCgacg--CCGCCCGCGa -3'
miRNA:   3'- -GCGCCgGUAGaaccuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 103717 0.69 0.608587
Target:  5'- cCGCGGCCGcc--GGccgCCGCCCGCcgGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GGUGGGCG--CG- -5'
6365 5' -58.6 NC_001847.1 + 103417 0.69 0.618654
Target:  5'- cCGCGGCCGcUCcgcagcgGcGcgCgGCCCGCGCc -3'
miRNA:   3'- -GCGCCGGU-AGaa-----C-CuaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 103367 0.66 0.793763
Target:  5'- gGCaGGCCGUgUUGGc-CgGCgCGCGCg -3'
miRNA:   3'- gCG-CCGGUAgAACCuaGgUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 103241 0.71 0.519527
Target:  5'- cCGCGGCCGugaUCUgcGGcggCAUCCGCGCg -3'
miRNA:   3'- -GCGCCGGU---AGAa-CCuagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 102909 0.67 0.718594
Target:  5'- aGCGGCUAUCgacg--CCGCgUGCGCc -3'
miRNA:   3'- gCGCCGGUAGaaccuaGGUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 102896 0.7 0.555674
Target:  5'- cCG-GGCCcgCUcugggcuccgccccUGGGUCCGgcgcCCCGCGCc -3'
miRNA:   3'- -GCgCCGGuaGA--------------ACCUAGGU----GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 102848 0.66 0.793763
Target:  5'- cCGCGGCggCGUCgcGGggCCGCgCCaCGCg -3'
miRNA:   3'- -GCGCCG--GUAGaaCCuaGGUG-GGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 102769 0.66 0.775648
Target:  5'- gCGCGacGCCcgCgacgccGGcgCCcCCCGCGCg -3'
miRNA:   3'- -GCGC--CGGuaGaa----CCuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 102559 0.69 0.614626
Target:  5'- gGCGGCCGcgacuaggcgcagCUUGGcGUCCGCCaggucgcccaGCGCc -3'
miRNA:   3'- gCGCCGGUa------------GAACC-UAGGUGGg---------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 102380 0.71 0.490914
Target:  5'- gGcCGGCCGUCgcgaaGcgCCGCCCGCGa -3'
miRNA:   3'- gC-GCCGGUAGaac--CuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 102316 0.67 0.718594
Target:  5'- gGCGGCCA-CgcgGGccucgCgCGCUCGCGCg -3'
miRNA:   3'- gCGCCGGUaGaa-CCua---G-GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 102220 0.67 0.747563
Target:  5'- gCGCgGGUCGUCgggcgGGAcggcgUCCaggcGCUCGCGCg -3'
miRNA:   3'- -GCG-CCGGUAGaa---CCU-----AGG----UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 101928 0.67 0.708782
Target:  5'- gCGCGGCgCcaagccGAgCCACCCGCGCc -3'
miRNA:   3'- -GCGCCG-GuagaacCUaGGUGGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.